Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1689 ATGGGGAAGAAAGTGAGAAAGAAGAGCCGTATTGCGGTTAAGAACAAGGAGATAACTACCGACTCTGTTTCTGTTTCTGTTACAAAAGACACAAATAACTCTTGCCCTCATCTTCTCAAAGGTGTTAATTTGAATACATTATCTACTAAGATCGCCTCTTCTTATCAATTAAGGTGTCAAGATTGTGCTGACAGGAAGGGTAATAAAGGAAAAGGTAAACATGGCAAAAACAAAGGCTCTTCAGATTCAAAATCCGAGTCTAAGGCTATATGGGTTTGTTTGTACTGTGCTCAATTTACCTGTGGAGGTGTCGGGCTGCCCACATCCTCTGAATGTCATGCGGTTAGGCATGCTAGTCTAACTCGCCACCCTTTGGTCATTCATCTTGAAAAACCTCAACTCTGTTGGTGTTTTCATTGCAAAATGCCTATTCAACTTGATAGATTACAAGAGACTGATGAAACAAGCCGTCTTCTATCTGATGCTGCCAAGTTGTTGAAAGGACGGCCATCCGGGAAAACACCCCTCGATACTGAGGATGTTCATTTTAGTGATGGCAGTGTTACTTCAGAAATTAAATCAAAAATTCTGTTCACAACAGCTAACTCAAATGGACAAGGTGGTTATGTAGCCAGAGGTATGGTTAATCTTGGGAATACTTGCTTCTTCAATTCAATCATGCAAATTCTGTTAGCTATGAATAAATTGCGCAATAACTTTCTGAACTTGGATGCTCCTGTCGAGGGGGCATTGACTAGTTCCTTGAAGAAACTGTTCAATGAAATAAATCCTGAATCGGGATTGAGAAACATTATAAATCCCAGATCCTTTTTTGGTTGTGTATGTTCTAAGTATCCACAGTTTCGAGGATATCAGCAGCATGACAGTCATGAATATCTCTGTTGTTTACTGGATGGGTTGAGTACTGAAGAACTAGCTGCAAGGAAACAGAACGGTTCTCCCAAGAAAGATGGGACCACTCCTAATAATACTCTAGTCGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTGTGTTGCATTGACTGTGGGCATTTCTCAACCGTGTATGAGCCTTTTTTAGATCTTTCCCTTCCTGTCCCAACTAAGAAGTCTCCACCTAGGAAGGCTCAACATGTATCTCGAACCAAAAAATCAAAACTTCCACCGAAAAAGGGTGGTAAGACTCGATACAAAGGTAACAAGGATGCAAATCACTTACCTGTCCAAAGCCTATTAAAACAGTCATCCAGCCATGTATCATCATGCCCTGCTCAGTCAAACATATCATCAGTTGCTGGAGAGATGTTGGATTCTTCTGCTGATTATACTGTACTAGGTTCTGGAGAAATAAGCAGCATGACTGAAAAACAGAATTCATCTTCACCTAATTCGGTTGCTGTCGAAGAGCCTCAGCATACGCTGCAGGTGCATGACAATGCTACAGAGGAAACATCAGCTTCAGCGGATGATTTTACCTGGTTGGATTTTGTGGAAGCTGTAGTGGTAGATGAAGGTGATTCCATTTCCCAGAAGGAAGATACTCCGGAGGTACATGACACTAGGAATAATAATGAATGTTTAAATGAGTTACATGTACAGGCGGCTAGCTGTGAATCTAGTGGTCCATTTTGTTTTCTTAAGGATGAGGAGGACCAAAACCTAAGACCTGATTCTTCTTCAGCAAATAGGTGGGAAGATGAGGTTCCATTACAAGTTCAAGGTTCAGAAGTGCTGTTACTTCCATATAAGGAAGAAAGTTCCTCCACTGCTGAGATCACTGGATACCATGGTGAGGCCTCCTCATCTGTTTTAGGCTGTGGTCAAGAAGAAATAGAGTTTGATGGACTTGGTGACTTATTCGATGAGCCTGAATTAGTTTTTGCAGGGCCTGCTCCTAGACCTTCTTCAAGTGGCGGGGTCAAGGAAGCTGGTTTTATTGTTGGAAACAGCAACAGCGAGTCTGATCCAGATGAAGTAGATGATGCAGATACTCCGGTCTCCGTAGAGAGTTGCTTGGCACATTTTATAAAACCTGAGCTTCTCTCAGATGATAATGCTTGGCATTGTGAGAACTGTTCTAAAACTCTCTGTCAAAAGATGGAAACTTATACACAGGCAAAAAATGCATCCGATGGAAATGAGACCAGATGTCACGATGAATCAGGGTATGCAGCTTGTTCTGTTAAAGTTGGTGGTATTGGTAATGGGGATATGGGAAATGAAAAAAATGTAGAAAGTTCGGTTTCTCATGTTAAACTTGACACGAAACTTGAAAGTGGTCAAATAAATCAATTGAATACAAATAATATTGATAGGGATCATGGGGCATTAGGGATGAAAGATAATGAGGAATTACAATCATCAGGTTCGCATAAAGCTTGCAATGAAGTAAGTTGTGACCGTCCACCTGCTGATTCTTCTACTACATTGCATATGATTGGAACTATCCAAAAAGGTGATAGTCAGATGTTAGGTCAGGATAACAATGATTCAGATGAATGCAGCGAGGAAGAGGCCGGCTCTAAAAGTGTGAAAGTGAAGAGGGATGCTACTAAGAGGGTCCTCATTTATAAAGCTCCACCTGTTTTGACCATTCATTTAAAGAGATTCAGCCAAGACGCTCGTGGTCGCTTAAGTAAATTAAATGGTCATGTCAGCTTCAGAGAAAGAATGGATCTCAGACCATATATGAATCCCGGGTGCATAAGTGAAGAGAACTATGAATACAATTTGGTTGGTGTAGTGGAGCACTCAGGAAGTATGCGAGGGGGTCACTATGTTGCATATGTGAGAGGAGGCCAGAGGAACACAGGGAACGCTAATAAAGAGGTTGAGGGTTCCACATGGTATCATGCCAGTGATGCATATGTACGTGAAGCTTCTTTCAATGAAGTTCTTCGCTGTGAGGCTTACATTTTATTCTATGAAAAAAATTAA 2940 0.4119 MGKKVRKKSRIAVKNKEITTDSVSVSVTKDTNNSCPHLLKGVNLNTLSTKIASSYQLRCQDCADRKGNKGKGKHGKNKGSSDSKSESKAIWVCLYCAQFTCGGVGLPTSSECHAVRHASLTRHPLVIHLEKPQLCWCFHCKMPIQLDRLQETDETSRLLSDAAKLLKGRPSGKTPLDTEDVHFSDGSVTSEIKSKILFTTANSNGQGGYVARGMVNLGNTCFFNSIMQILLAMNKLRNNFLNLDAPVEGALTSSLKKLFNEINPESGLRNIINPRSFFGCVCSKYPQFRGYQQHDSHEYLCCLLDGLSTEELAARKQNGSPKKDGTTPNNTLVDALFGGQISSTVCCIDCGHFSTVYEPFLDLSLPVPTKKSPPRKAQHVSRTKKSKLPPKKGGKTRYKGNKDANHLPVQSLLKQSSSHVSSCPAQSNISSVAGEMLDSSADYTVLGSGEISSMTEKQNSSSPNSVAVEEPQHTLQVHDNATEETSASADDFTWLDFVEAVVVDEGDSISQKEDTPEVHDTRNNNECLNELHVQAASCESSGPFCFLKDEEDQNLRPDSSSANRWEDEVPLQVQGSEVLLLPYKEESSSTAEITGYHGEASSSVLGCGQEEIEFDGLGDLFDEPELVFAGPAPRPSSSGGVKEAGFIVGNSNSESDPDEVDDADTPVSVESCLAHFIKPELLSDDNAWHCENCSKTLCQKMETYTQAKNASDGNETRCHDESGYAACSVKVGGIGNGDMGNEKNVESSVSHVKLDTKLESGQINQLNTNNIDRDHGALGMKDNEELQSSGSHKACNEVSCDRPPADSSTTLHMIGTIQKGDSQMLGQDNNDSDECSEEEAGSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVSFRERMDLRPYMNPGCISEENYEYNLVGVVEHSGSMRGGHYVAYVRGGQRNTGNANKEVEGSTWYHASDAYVREASFNEVLRCEAYILFYEKN 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1689 979 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 910 927 IPR018200 GO:0004843|GO:0006511
Lal17g1689 979 MobiDBLite consensus disorder prediction 783 806 - -
Lal17g1689 979 Gene3D Cysteine proteinases 194 466 - -
Lal17g1689 979 SUPERFAMILY RING/U-box 34 151 - -
Lal17g1689 979 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 978 - -
Lal17g1689 979 SUPERFAMILY Cysteine proteinases 212 978 IPR038765 -
Lal17g1689 979 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 212 979 IPR028889 -
Lal17g1689 979 MobiDBLite consensus disorder prediction 367 404 - -
Lal17g1689 979 SMART Zf_UBP_1 81 134 IPR001607 GO:0008270
Lal17g1689 979 ProSiteProfiles Zinc finger UBP-type profile. 33 163 IPR001607 GO:0008270
Lal17g1689 979 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 213 228 IPR018200 GO:0004843|GO:0006511
Lal17g1689 979 Gene3D Cysteine proteinases 525 711 - -
Lal17g1689 979 MobiDBLite consensus disorder prediction 821 846 - -
Lal17g1689 979 Pfam Zn-finger in ubiquitin-hydrolases and other protein 59 145 IPR001607 GO:0008270
Lal17g1689 979 MobiDBLite consensus disorder prediction 375 395 - -
Lal17g1689 979 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 4 978 - -
Lal17g1689 979 CDD Peptidase_C19K 851 977 - -
Lal17g1689 979 Pfam Ubiquitin carboxyl-terminal hydrolase 213 976 IPR001394 GO:0004843|GO:0016579
Lal17g1689 979 Gene3D Cysteine proteinases 778 979 - -
Lal17g1689 979 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 163 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1689 Lal-Chr17 18056888 18061212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1689 851 978 Miscellaneous Gene Families AT2G24640 36.641 1.26e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1689 K11844 - gmx:100780952 1222.61