Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1676 ATGTCAAAAATGGCTTATAGGTGTTATGTGCTTATGGTACTTGGTATAGTTGTTATTAGTTCCATGGTGGCCTCATGTGGTGCTAACTTGTTACAAGACTTTGATTTAACATGGGGTGATAACCGTGCTAAGATATTCAATAAGGGACAGCTTTTATCCCTTTCTCTTGATAAAGTCTCTGGCTCTGGCTTCCAGTCCAAGAAAGAGTACCTCTTTGGCAGAATTGATATGCAACTCAAGCTTGTTTCTGGCAACTCTGCTGGCACTGTTACTGCTTACTATTTATCATCACAAGGGGCAACACATGATGAGATTGATTTTGAGTTCTTGGGTAATGTAAGTGGTGACCCTTACATTCTTCACACAAACGTCTTTAGCCAAGGCAAAGGGAACAGAGAGCAACAATTCTACCTTTGGTTTGATCCCACAAAAAACTTCCACACTTACTCTATCATCTGGAAACCACAACACATTATATTTTTGGTTGATAACATTCCCATAAGGGTGTTCAAGAATGCAGAAAGAGTTGGTGTTCCTTTCCCAAAGAAGCAAGCAATGAGGATATACTCTAGTTTGTGGAGTGCTGATGATTGGGCTACAAGAGGTGGTTTGGTCAAAACTGATTGGTCTAAAGCACCCTTTACAGCTTATTACAGAAATTTCAAAGCCACTGAGTTCTCTTCCATTTCTGATGAAGCAGTTCAAAGCAATGAGATTGATGCTAATGGTAGAAGAAGACTTAGATGGGTGCAGAAATATTTCATGATCTATAACTACTGCAAAGATCTTAACCGATTCCCACAAGCTCTTCCTGCTGAATGTTGA 825 0.3976 MSKMAYRCYVLMVLGIVVISSMVASCGANLLQDFDLTWGDNRAKIFNKGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVSGNSAGTVTAYYLSSQGATHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRVFKNAERVGVPFPKKQAMRIYSSLWSADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSSISDEAVQSNEIDANGRRRLRWVQKYFMIYNYCKDLNRFPQALPAEC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1676 274 ProSitePatterns Glycosyl hydrolases family 16 active sites. 104 114 IPR008263 GO:0004553|GO:0005975
Lal17g1676 274 CDD GH16_XET 27 274 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal17g1676 274 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 218 IPR000757 GO:0004553|GO:0005975
Lal17g1676 274 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Lal17g1676 274 Gene3D - 16 274 - -
Lal17g1676 274 Pfam Glycosyl hydrolases family 16 32 211 IPR000757 GO:0004553|GO:0005975
Lal17g1676 274 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 10 274 - -
Lal17g1676 274 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 274 IPR013320 -
Lal17g1676 274 PIRSF EndGlu_transf 1 274 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lal17g1676 274 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 237 274 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lal17g1676 274 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 274 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1676 Lal-Chr17 17934738 17942601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1676 12 274 Glycoside Hydrolase AT4G14130 72.364 9.51e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1676 K08235 - gmx:100784191 486.108