Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1631 ATGGGTGCTGCGGGTTCGAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTATTTTGGCCTTGAGAATTTTGGTAACACTTGTTACTGTAACAGCGTTTTGCAGGCACTATACTTCTGTGTTCCATTTCGCGAACAGTTGCTAGATTATTATGGAAACAACAAAAGTCTGGCTGATTCAGAGGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTCGCAGATAAGTTCCCAGAAGAAAAAAACAGGTGTTATTGCTCCCAAACGATTTGTACAGAGATTGAAAAAACAGAATGAACTATTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAACGAACTTGTCGACATTCTGGAGAAAGAGGATCAGGCTGCAAAAAATGATGAAGAGACGTCACCACCTTCTGAAAAAGCTGCAAACGGTCCTAAGAATGGTCTATCTAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGGTGCCTGCAATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGACCTCAGCCTTGATATTGAACAAAACAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACTGAGACGTTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCGCCCCACATTTTGGTCATCCATCTTAAGCGGTTTAAGTACATTGAGCAGTTGGGCCGCTACAAGAAGCTGTCTTACCGGGTTGTTTTCCCCCTAGAGCTGAAATTGAGTGATACTGTTGAAGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTCGTCCATGTTGGGAGTGGACCCAACCACGGGCATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGCTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCACAAGAATATTCCAGTAACACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGCCAACAGGAACTAG 1104 0.413 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYGNNKSLADSEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEDQAAKNDEETSPPSEKAANGPKNGLSNGAKKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTVEEADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIANRN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1631 367 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 365 - -
Lal17g1631 367 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Lal17g1631 367 CDD Peptidase_C19G 24 361 - -
Lal17g1631 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 365 - -
Lal17g1631 367 MobiDBLite consensus disorder prediction 133 160 - -
Lal17g1631 367 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Lal17g1631 367 SUPERFAMILY Cysteine proteinases 21 361 IPR038765 -
Lal17g1631 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Lal17g1631 367 Gene3D Cysteine proteinases 5 362 - -
Lal17g1631 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1631 Lal-Chr17 17652839 17658228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1631 24 367 Miscellaneous Gene Families AT4G31670 25.568 2.95e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1631 K11842 - gmx:100787737 724.161