Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1543 ATGTTTGGTTCAAAGGTTCTGATGGAGAGTTTAATGTCTAGGAGAAATTTTCATTTGGTGTTTCTGTTATTGTTTTTGTGGGTTTGTTATGTCACAGCCACTGTGACTTATGATCATAAAGCCATTGTTATTAATGGACAAAGAAGAATTTTGATCTCTGGTTCCATTCACTATCCAAGAAGCACACCTCAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCATTGATGTTATAGAGACTTATGTGTTCTGGAATGGACATGAACCTTCTCCTGGAAAATATTATTTTGAGGATAGATTTGACCTTGTTTGGTTCATCAAGTTGGTTCAGAAAGCTGGTTTATATGTTCATCTCAGGATTGGTCCTTTTGTATGTGCTGAATGGAACTTTGGGGGTTTTCCTATTTGGCTCAAGTATGTTCCTGGTATTTCTTTCAGAACAGACAATGAGCCTTTCAAGGCTGCAATGCAAAAATTCACTGAGAAGATTGTAAATATGTTGAAAGCAGAGAAGCTGTTTCAAACCCAGGGAGGTCCAATAATTCTGTCTCAGATAGAGAATGAGTATGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAAAGCTTATACCAAATGGGCTGCTCAAATGGCTGTAGGTCTTGATACTGGTGTCCCTTGGATTATGTGCAAGCAAGAAGATGCACCTGATCCTATTATTGATACCTGCAATGGATTTTACTGTGAAAACTTCACTCCAAACAAGAACTACAAACCCAAATTGTGGACAGAGAATTGGACTGGCTGGTACACTGCTTTTGGTGGTGCAACCCCTTATAGACCAGCAGAAGATATAGCATTTTCAGTCGCCCGATTCGTTCAAAATCGCGGTTCACTCTTTAACTACTATATGTATCATGGAGGAACTAACTTCGGCCGAACATCCAATGGTCTCTTCATTGCCACAAGTTATGACTATGATGCTCCCATTGATGAATATGGACTTCTAAATGAACCAAAATGGGGGCATCTGAGAGAATTGCATAAAGCAATAAAACGATGCGAGTCGGCTTTAGTGTCTGTTGATCCCACAGTGTCATGGCCTGGAAAAAACCTTGAGGTACATGTGTACAAGACAGAATCTGCCTGTGCTGCATTTCTTGCAAACTATAACACCGACTATTCAACAAAAATTAATTTCGGTAATGGACAATACGATCTACCACCTTGGTCTATTAGTATTCTTCCTGACTGCAAAACTGAAGTTTTCAACACTGCAAAGGTTAATGCCCCTAGAATACATAGGCAAATGACTTCAATAAACAGCGCATTTGTGTGGCAGTCATACAACGAAGAACCTGCATCATCAAGTGAAAATGATCGCATCACAGGATATGCACTATGGGAGCAGGTTAAGGTGACCCGCGATTCTTCAGATTATTTATGGTACATGACAGATGTCAACATTGGTCCTAATGATATAAAGGATGGGAAATGGCCTGTTCTTACTGCAATGTCAGCAGGTCATGTTCTTAATGTTTTCATCAATGGTCAATATGCAGGAACTGCATATGGGAGTTTGGATGATCCTAGATTAACATTTAGTCAAAGTGTGAATCTGAGAGTTGGCAATAACAAGATTTCATTACTTAGTGTGTCGGTTGGTCTACCGAATGTTGGTACTCACTTTGAGACATGGAATGTTGGAGTGCTAGGCCCAGTCACATTGACAGGTCTAAGTAGCGGAACACGAGATCTTTCGAAGCAAAAATGGTCTTACAAGATTGGTCTGAAAGGTGAAAGCTTGAGGCTTCATACTGAAGCTGGTAGTAGCTCTGTTGAATGGGTACAAGGATCATTAGTGGCTAAAAAACAACCTTTGGCATGGTATAAGACGACTTTTAGCGCACCATCCGGCAACGACCCATTGGCTCTGGATTTAGGTAGCATGGGTAAGGGTGAAGTATGGGTAAATGGTCAAAGCATCGGACGCCATTGGCCTGGATTCAAAGCACGCGGTAAATGCAGCAATTGTAACTATGCTGGAACTTATACCGATACGAAATGCTTAGCAAATTGCGAACAACCCTCCCAGAGATGGTATCACATTCCTCGGTCGTGGCTGAGATCGAGTGGGAACTACTTGGTTGTGCTTGAAGAATGGGGAGGTGATCCTAATGGAATTGCTTTGGTGAAAAGAACATGA 2193 0.4145 MFGSKVLMESLMSRRNFHLVFLLLFLWVCYVTATVTYDHKAIVINGQRRILISGSIHYPRSTPQMWPDLIQKAKDGGIDVIETYVFWNGHEPSPGKYYFEDRFDLVWFIKLVQKAGLYVHLRIGPFVCAEWNFGGFPIWLKYVPGISFRTDNEPFKAAMQKFTEKIVNMLKAEKLFQTQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWIMCKQEDAPDPIIDTCNGFYCENFTPNKNYKPKLWTENWTGWYTAFGGATPYRPAEDIAFSVARFVQNRGSLFNYYMYHGGTNFGRTSNGLFIATSYDYDAPIDEYGLLNEPKWGHLRELHKAIKRCESALVSVDPTVSWPGKNLEVHVYKTESACAAFLANYNTDYSTKINFGNGQYDLPPWSISILPDCKTEVFNTAKVNAPRIHRQMTSINSAFVWQSYNEEPASSSENDRITGYALWEQVKVTRDSSDYLWYMTDVNIGPNDIKDGKWPVLTAMSAGHVLNVFINGQYAGTAYGSLDDPRLTFSQSVNLRVGNNKISLLSVSVGLPNVGTHFETWNVGVLGPVTLTGLSSGTRDLSKQKWSYKIGLKGESLRLHTEAGSSSVEWVQGSLVAKKQPLAWYKTTFSAPSGNDPLALDLGSMGKGEVWVNGQSIGRHWPGFKARGKCSNCNYAGTYTDTKCLANCEQPSQRWYHIPRSWLRSSGNYLVVLEEWGGDPNGIALVKRT 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1543 730 Gene3D - 597 730 - -
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 45 62 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 66 84 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 121 140 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 178 193 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 257 272 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 294 309 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 314 330 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Lal17g1543 730 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 180 192 IPR019801 GO:0004553|GO:0005975
Lal17g1543 730 Gene3D - 448 585 - -
Lal17g1543 730 Gene3D Glycosidases 29 350 - -
Lal17g1543 730 SUPERFAMILY Galactose-binding domain-like 408 575 IPR008979 -
Lal17g1543 730 SUPERFAMILY Galactose-binding domain-like 586 725 IPR008979 -
Lal17g1543 730 PANTHER BETA-GALACTOSIDASE 18 730 - -
Lal17g1543 730 Pfam Beta-sandwich domain in beta galactosidase 354 424 IPR041392 -
Lal17g1543 730 Pfam Glycosyl hydrolases family 35 42 346 IPR031330 -
Lal17g1543 730 SUPERFAMILY (Trans)glycosidases 34 351 IPR017853 -
Lal17g1543 730 PANTHER BETA-GALACTOSIDASE RELATED 18 730 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1543 Lal-Chr17 16850843 16864337 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1543 8 729 Glycoside Hydrolase AT3G13750 67.950 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1543 - - gmx:100810170 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1543 17 16850843 16864337 Lal17g1543 17 16850843 16864337 ECH
Lal14g1679 14 16989924 16996843 Lal17g1543 17 16850843 16864337 PCT
Lal17g1543 17 16850843 16864337 Lal14g1679 14 16989924 16996843 PCT