Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1505 ATGAGTTTCATCTTCGGAAAGAGAAAAACACCCGCTGAGCTTCTGCGGGAAAATAAGAGGATGTTGGACAAATCAATTCGAGAAATAGAACGAGAGAGGCAAGGCTTACAAACACAAGAGAAAAAATTGATTTTGGAGATAAAGAAAAGTGCCAAGCAAGGCCAGATGGGAGCTGTTAGAGTTATGGCAAAAGATCTTGTTAGAACAAGGCATCAGATTGAAAAGTTTTATAAACTAAAATCACAGCTCCAAGGTGTATCACTCAGAATTCAGACTTTGAAATCAACACAAGCAATGGGTGAGGCTATGAAAGGCGTGACAAAAGCCATGGGGCAAATGAATAGGCAGATGAATTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGACAGAATGAAAAGATGGAATTGACATCTGAGGTGATGGCAGATGCAATAGATGATGCTTTGGAAGGGGATGAAGAAGAAGAAGAAACAGACGAACTAGTGAACCAGGTTCTTGATGAGATTGGAGTTGACATAAACCAAGAGCTTGTAAATGCACCATCATCAGCTGTTGCTGCCCCAGCTGCAAAGTCTAAGGTAGCTCAAGTTGAAACTACAGAGAATGATGATGGCGGGATAGATAGCGATTTACAGGCACGGTTAGACAATTTAAGAAAAATGTAA 672 0.4033 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTSEVMADAIDDALEGDEEEEETDELVNQVLDEIGVDINQELVNAPSSAVAAPAAKSKVAQVETTENDDGGIDSDLQARLDNLRKM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1505 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Lal17g1505 223 Gene3D - 6 181 - -
Lal17g1505 223 MobiDBLite consensus disorder prediction 185 223 - -
Lal17g1505 223 Coils Coil 12 46 - -
Lal17g1505 223 MobiDBLite consensus disorder prediction 209 223 - -
Lal17g1505 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Lal17g1505 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
Lal17g1505 223 Coils Coil 119 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1505 Lal-Chr17 16448743 16451877 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1505 K12191 - gmx:100526885 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1505 17 16448743 16451877 Lal17g1505 17 16448743 16451877 ECH
Lal14g1659 14 16854222 16857064 Lal17g1505 17 16448743 16451877 PCT
Lal17g1505 17 16448743 16451877 Lal14g1659 14 16854222 16857064 PCT