Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1498 ATGAAGATAACTCTTATCAACTTGTTCATCATCTTATCTCTTATCTCCATCACACATGCTTCAGTTGTAGATTTCTGTGTAGCAGATTACACATTTCCTAATGGCCCAGCAGGATATTCATGCAAGAAACCTTCATCAGTAACAGTTGATGATTTTGTTTACCATGCCCTTGCAATTTCTGGTAACACCACAAACATCATAAATGCTGCTGTTTCTCCAGCATTTGATGCACAATTCCCTGGTATCAATGGCCTTGGAATTTCCATTGCTCGTTTGGATTTAGCTGTTAATGGAGTTATACCACTTCATACTCATCCTGGTGCATCAGAAATACTTGTTGTAGTACAAGGAACAATATGTGCTGGTTTTGTTGCATCTGATAATACTGTTTACCTTAAAACTCTCAAAAAGGGAGACATTATGGTATTCCCTCAAGGGTTACTTCATTTTCAGGTTAATGGAGGTGGTTCTACTGCTTTAGCTTTTGTTAGCTTTAGTAGTGCAAATCCTGGTCTTCAAATTCTGGATTTTGCTTTGTTTAAAAGTGATTTTCCTACTCCATTGATAGTACAAACTACTTTTATTGATGCTGCTGTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGCTCAGGTTAA 636 0.3774 MKITLINLFIILSLISITHASVVDFCVADYTFPNGPAGYSCKKPSSVTVDDFVYHALAISGNTTNIINAAVSPAFDAQFPGINGLGISIARLDLAVNGVIPLHTHPGASEILVVVQGTICAGFVASDNTVYLKTLKKGDIMVFPQGLLHFQVNGGGSTALAFVSFSSANPGLQILDFALFKSDFPTPLIVQTTFIDAAVVKKLKGVLGGSG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1498 211 CDD cupin_OxOx 19 207 - -
Lal17g1498 211 Gene3D Jelly Rolls 19 210 IPR014710 -
Lal17g1498 211 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Lal17g1498 211 PRINTS Germin signature 133 153 IPR001929 GO:0030145
Lal17g1498 211 PRINTS Germin signature 166 181 IPR001929 GO:0030145
Lal17g1498 211 SUPERFAMILY RmlC-like cupins 22 205 IPR011051 -
Lal17g1498 211 Pfam Cupin 60 182 IPR006045 -
Lal17g1498 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 207 - -
Lal17g1498 211 SMART Cupin_1_3 55 201 IPR006045 -
Lal17g1498 211 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Lal17g1498 211 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 9 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1498 Lal-Chr17 16400483 16401118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1498 1 210 Miscellaneous Gene Families AT5G20630 65.403 1.88e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1498 - - gmx:100806553 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1498 17 16400483 16401118 Lal17g1498 17 16400483 16401118 ECH