Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1417 ATGCAAGTGGGTGACCCACACGCGCAGCAAAGTGCGGTGATCAAACATCATTCCCGCCCCACCAATAAGCTGAAAAAGCTCGCCAGCGCGTGTCAACGCGTCACGCTTAGCTGGTTCCACACGCCACGTGTCACATTCTCAACGGATGAATCAAAACCATGCACCCGCACCAGATTCCATCTCACTTCTCTTTCCTCTTTCTCTCTCTCTCTCTTTCCGAAGCATACAATTATTTCGAACCTGTTTATGAAACCCATTGGAAGAAATACTATTTTTGTGATTTATGTGCTTGTGAGAGGTCTTGATTCCCACAGATGTGCCCAAAGCAAGATTGTTGTACCTATTTTAAGCACAAGTCAAATGCCATCCCTAAAAATGAAGAGCAAAGTAAGCACGAGCTGTTTAACAGAAAGACAGGATCTTCACGTGTGTCCGAAATCAAAAATAATATCCAAAAATCCATGCTCTAAAATCACGATTTCTGCTCAAGTGGCAGAAATAGACACTACTGTTCAAAGCTGCCTAGACGTTTCCGCAAGGACACTGCCCAAAGACACTGCAAGTGATCAATCTATTGACAATAAAGAATTCCTGGATAATGACAAATCTGAGTCCCAGCACCAATTTTCTGTCTGTTCCCCCGTCATGGGAAGAATGGAACTAACCAATCCATGTACAGCAAACTTGGAAACAATTTTTTCTCCTGCTTTTGAGCCCGTTGAAGTTCATTCACAACATCATACCGAAAAAGATGCAGGCCGCATTGGTGATACTGACATACTGGGAGTTGGAGCTGATGAGGGAAGAAGCATATGTGGCTACGAAACATGTGATGTGTCAGACTTCTACATATCTGACATGATCATTACAAGCTTACCGTTCGGTGAAAATACCTTCGATGACGATATCATTACAACCAGCCGCTTATCTGACTATGGATCTGCTGAGCCATCCGTGTTCAATGCATGCGAACAGTACATGATCCTGCCTGCTCTTGAAGATGATGGTAAAGTTAGCAGTACTTCTGATATCATATCATACGAAGAAGCCGTGCTGGTTCAAGAAGATGCTAGCCTGTATTCAGCAATTGGTCAGATAAGATCCTACAACCTGGAATCTGATGTGAAAAATGACTCGGATAAGGCAGAGTGCTTTGATCCGCAGTCATTTATCAAGAATTCACCGGAATTATCGGAAATAGAATTAAATGGCCAGAATGCTTTGATTCCTATGCAATCTCCAAGAAGAAAGTCAGTAACCCTAGTTCTTGATTTAGATGAGACACTTGTTCATTCAACACTGGAACATTGTGATGATGCTGATTTTACATTTACTGTATTCTTCAACATGAAAGAGTATACAGTATATGTAAAACAGAGGCCTCATCTCCACACATTCTTCGAGAGAGTATCTCAGATGTTTGAAGTAGTTATTTTTACTGCCAGCCAAAGCATATATGCAAAACAACTTCTTGATGTATTGGATCCTGATGAAAGATTTATTTCTCGCCGGGTGTATCGAGAATCATGCCTTTTTGCAGATGGAAATTACACAAAAGATCTTACCGTATTAGGTGTTGATCTCGCAAAAGTTGCCATAATTGATAATTCACCTCAGGTTTTCCGGTTGCAAGTGAATAACGGTATTCCAATAAAGAGTTGGTTTGATGATCCATTAGATTGTGAACTGATGTCATTACTTCCCTTTCTAGAGACCTTGGCTGACGCCGATGATGTCCGTCCTATCATTGCTAAGAGATACGGTACCAAAGAATAA 1776 0.4144 MQVGDPHAQQSAVIKHHSRPTNKLKKLASACQRVTLSWFHTPRVTFSTDESKPCTRTRFHLTSLSSFSLSLFPKHTIISNLFMKPIGRNTIFVIYVLVRGLDSHRCAQSKIVVPILSTSQMPSLKMKSKVSTSCLTERQDLHVCPKSKIISKNPCSKITISAQVAEIDTTVQSCLDVSARTLPKDTASDQSIDNKEFLDNDKSESQHQFSVCSPVMGRMELTNPCTANLETIFSPAFEPVEVHSQHHTEKDAGRIGDTDILGVGADEGRSICGYETCDVSDFYISDMIITSLPFGENTFDDDIITTSRLSDYGSAEPSVFNACEQYMILPALEDDGKVSSTSDIISYEEAVLVQEDASLYSAIGQIRSYNLESDVKNDSDKAECFDPQSFIKNSPELSEIELNGQNALIPMQSPRRKSVTLVLDLDETLVHSTLEHCDDADFTFTVFFNMKEYTVYVKQRPHLHTFFERVSQMFEVVIFTASQSIYAKQLLDVLDPDERFISRRVYRESCLFADGNYTKDLTVLGVDLAKVAIIDNSPQVFRLQVNNGIPIKSWFDDPLDCELMSLLPFLETLADADDVRPIIAKRYGTKE 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1417 591 CDD HAD_FCP1-like 420 551 - -
Lal17g1417 591 Gene3D - 404 587 IPR023214 -
Lal17g1417 591 ProSiteProfiles FCP1 homology domain profile. 414 573 IPR004274 -
Lal17g1417 591 SMART forpap2 417 561 IPR004274 -
Lal17g1417 591 PANTHER SCP1-LIKE SMALL PHOSPHATASE 4-RELATED 121 589 - -
Lal17g1417 591 PANTHER NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED 121 589 - -
Lal17g1417 591 SUPERFAMILY HAD-like 408 584 IPR036412 -
Lal17g1417 591 Pfam NLI interacting factor-like phosphatase 420 580 IPR004274 -
Lal17g1417 591 TIGRFAM HIF-SF_euk: dullard-like phosphatase domain 419 583 IPR011948 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1417 Lal-Chr17 15631691 15639991 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1417 K17616 - gmx:100799803 798.119