Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1065 ATGTGGAAGCTTCGTCGGAAAACGGTTCTCATACCATTAACACCAAACCACTCTTCATCAATCTCTACATCATCCTCTTCAAATATCACAGCAAACCCCCTTCTACGCTGCAAAACTCACCACAACTCACTTTTCTACTGCAATCATGTTTCCATGGAATTCGACTCATCAAACAACCCCCACCTTCGTATACATGATTTCTGCGAAATGGGTCTCGTCGAAAAAGCATTGCTGGCCTATAAAAACTTGAACACATTGCCTCTGTTACGTACTTGCAACGCACTTCTTCATGGTTTGGTTAAGGCGCGGTGCTTTGATTCCGCCTGGGATGTGTATAGGGATATGGTAGCTCGTGGGTTTTCGCCCACTGTGATCACCTACGGCATTCTAATGCAATGTTGTTGTGTTCAAGGTGATTTAGTGAATGCACGTAAGGTGTTTGATGAAATGCTTGACAGGAGGATTGAGCCGACGGTTATTATTTACACTATTCTTATTCGTATGTTTTGCAATGAGGGCCAAATGGAGGATGCGAAAGGTGTTGTTAGGATGATGAAGGAATCTGGAGTGAATCCCAATTTGTACACTTACAATACTCTTATTGATGGGTACTGCAAGGTGGCTGATGTTGAACGAGTTTTTGCATTGTATCGCGATATGCTATGGAAGGGTTTGCGACCTAATGTTGTGACATTTGCTACTCTTGTAGATGTTCTGTGCAAGTTGGGGGATTTGAAGGCTGCAAAGAACTGTTTTGCTTTCATGCCAAAATTTGGAGTTGTTCCTAATACATATGCTTATAATTCTCTGATAGATGGGTACTGTAAGGTGGGGAACTTGGATGAAGCAATGAATTTGAGAGTAGAAATGGAAAGGTGTGGAATCTTCCCCGATGTATTCACTTTCAATATACTCATTAAGGGTCTAAGCGACTCGGGTAGATTGGAAGAAGCTGAGGATTTAATGCAGAAAATGGACACAGTAGGGGTACTTTCAAATTGCGTGACATACAATATAATAATTTATGGATACTCTAAAAAGGGGCATATGAAGAAGGCTATGGAGGTGTGTTCCCAAATGACTGGAACGAAAATAGAACCCAATGTCATCACATTTTCTACCTTAATTGATGGGTTCTGTAAATTAGGAGATGTAAAGGCTGCAATGGGTTTGTACACGGAAATGGTAATCAAAGGTCTCGTGCTGGATGTGGTAACTTACACATCATTGATTGATGGGCACTGCAAGGATGGGAACATGAAAGAGGCTTTCAGGCTGCACAAGGAGATGCTGAGTGTAGGACTAAAACCCAGCGTGTTTACCGTTAGTTGTTTAATTGATGGCCTTTTCAAAGACGGAAGAACATCCGATGCAATCAAACTATTCTTGGAGAAAACTGGATCTAGTTTCAAGATCGATAGCAGCTTCTGCTCTTTAAACAATGTAATGTACACCATTTTGATTCAAGGTTTATGTAAAGATGGACAGATCTTTAAGGCATCTAAGTTTTTCAAAGATATGAGATGTAATGGGATTAAACCAGACATGCTAGTTTATGTTACCATGTTGCAGTCACATTTCCTATCCAAGCATATGCTTGATGTAATGATGTTGCATGCAGACATACTGAAGATGGGTGTTATGCGAAATACTTCGATATGCCGTGTATTATCCAGGGGATATCGAGAGAATCGATATTTTAGATCAGCCAATTTTTGTTCTAAACATTTAAGGGAATATTGTAGGGTTTTCTATACCAGGAAGGTGCAAGTTGTGACTCCTTAA 1785 0.4045 MWKLRRKTVLIPLTPNHSSSISTSSSSNITANPLLRCKTHHNSLFYCNHVSMEFDSSNNPHLRIHDFCEMGLVEKALLAYKNLNTLPLLRTCNALLHGLVKARCFDSAWDVYRDMVARGFSPTVITYGILMQCCCVQGDLVNARKVFDEMLDRRIEPTVIIYTILIRMFCNEGQMEDAKGVVRMMKESGVNPNLYTYNTLIDGYCKVADVERVFALYRDMLWKGLRPNVVTFATLVDVLCKLGDLKAAKNCFAFMPKFGVVPNTYAYNSLIDGYCKVGNLDEAMNLRVEMERCGIFPDVFTFNILIKGLSDSGRLEEAEDLMQKMDTVGVLSNCVTYNIIIYGYSKKGHMKKAMEVCSQMTGTKIEPNVITFSTLIDGFCKLGDVKAAMGLYTEMVIKGLVLDVVTYTSLIDGHCKDGNMKEAFRLHKEMLSVGLKPSVFTVSCLIDGLFKDGRTSDAIKLFLEKTGSSFKIDSSFCSLNNVMYTILIQGLCKDGQIFKASKFFKDMRCNGIKPDMLVYVTMLQSHFLSKHMLDVMMLHADILKMGVMRNTSICRVLSRGYRENRYFRSANFCSKHLREYCRVFYTRKVQVVTP 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1065 594 Gene3D Tetratricopeptide repeat domain 151 222 IPR011990 GO:0005515
Lal17g1065 594 Gene3D Tetratricopeptide repeat domain 62 150 IPR011990 GO:0005515
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Lal17g1065 594 PANTHER OSJNBA0060P14.6 PROTEIN 64 566 - -
Lal17g1065 594 Pfam PPR repeat 223 252 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Lal17g1065 594 PANTHER ATPASE EXPRESSION PROTEIN 3 64 566 - -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Lal17g1065 594 Gene3D Tetratricopeptide repeat domain 324 473 IPR011990 GO:0005515
Lal17g1065 594 Gene3D Tetratricopeptide repeat domain 474 592 IPR011990 GO:0005515
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Lal17g1065 594 Pfam PPR repeat family 480 525 IPR002885 -
Lal17g1065 594 Pfam PPR repeat family 91 135 IPR002885 -
Lal17g1065 594 Pfam PPR repeat family 157 206 IPR002885 -
Lal17g1065 594 Pfam PPR repeat family 403 451 IPR002885 -
Lal17g1065 594 Pfam PPR repeat family 262 310 IPR002885 -
Lal17g1065 594 Pfam PPR repeat family 333 381 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Lal17g1065 594 Gene3D Tetratricopeptide repeat domain 223 314 IPR011990 GO:0005515
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 482 515 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 335 369 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 230 264 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 370 404 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 195 229 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 125 159 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 300 331 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 91 124 IPR002885 -
Lal17g1065 594 TIGRFAM PPR: pentatricopeptide repeat domain 161 193 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Lal17g1065 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1065 69 578 Glycosyltransferase AT1G05670 28.155 2.59e-71 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1065 - - lja:Lj1g3v0525420.1 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1065 17 9179227 9181011 Lal17g1065 17 9179227 9181011 ECH