Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1064 ATGAAACACTTGAAATGGTTAAACCCTTTGGTACAAAGTAGTGCTAACAAATTGGTTAATGTTCCTTTGTCCACATGGCATCTCAATGCTGAATTCCACAATAGCCTCAAGCCACCAAAGCCAAACCAGACCCTCAAAAAGTACCTTCAATGCAACAACCAAACCAAGGTCCTTTTATATTTCAGATACTTACTCAGAGAAAGATCCACTTTTAATTCTATTGATAGCTTTTCTTTTCTATTCGCTCTAAAGTCCTGCGAAAAGAAACATAGCTCGTTCGAAGGAAAACAATTGCATTGCCTCATACTGAAATTTGGGTTCCAGGATGTAGTTCAACTTCAGACATTGCTTCTTAAATTGTATGCTGGATGGGAGAATCTGTGTGAAGCACACCAATTGTTTGATGAAATACCCGATAAGAATATTATATGCTGGACCTCTTTAATATCTGCTTATGTTGATAATCACAAACCAAACAAAGCTTTAGAAGTATTCAGGCTGATGCAGGTGGACAATGTTGAACCTGATCAAGTCACGATAACGGTTGCTCTCTCTGCTTGTGCTGATACTGGGGCACTCGAAATGGGTGAAAGGATCCATGATTTTGTTCGGCGTAAACAGGGTATGAAAAAGGATTTGTGCTTGAATAATGCTCTCATTAATATGTATGCGAAATGTGGGGATATTGTAACTTCTAGGAGGTTGTTTGATAGCACAAAGAACAAAGATGTTACAACTTGGACTTCCATGATTGTGGGGCATGCATTGCATGGGCAAGCACATGAAGCTCTTCAACTTTTTGAAGAAATGAACACTAGGAGTGAGAAGAAAAACTTGAATTCCTGCAGCTATCTCGTAACCCCGAATGATGTGACGTTCATAGGAGTTTTAATGGCTTGCAGCCATACAGGATTGGTTGAGGAAGGCAAAGGCCATTTCAGAAGTATGACTGAAGATTATGGTATAAAGCCGAGAGAGCCTCACTTTGGCTGCATGGTAGATCTTTTCTGCAGAGCAGGGCATCTGAGAGATGCTTATGAATTCATTTTGGAGATGCCGGCGCCACCAAAAGCGGTAATCTGGCGAACCTTGCTGGGGGCATGCAGTCTCCATGGTGAATTAGAGCTCGGTGCAGAAGTGAGGCATAAGCTGCTAAAGTTGGACCCTGGTTATGCAAGTGACAGTGTTGCTATGTCTAATATTTATGCAAATAAAGGAATGTGGGATAAGAAAGTGATTGCTAGGAATCAGATAAAACAGTCAAGAGCTCCTGGTTGCAGCTCAATTGAGGTGGGAAGTGAGCTTATTGAATGTGTAACCACAGATTATAATCATCCTTTAAAGACAAATATCATATGTTCTTGA 1365 0.4066 MKHLKWLNPLVQSSANKLVNVPLSTWHLNAEFHNSLKPPKPNQTLKKYLQCNNQTKVLLYFRYLLRERSTFNSIDSFSFLFALKSCEKKHSSFEGKQLHCLILKFGFQDVVQLQTLLLKLYAGWENLCEAHQLFDEIPDKNIICWTSLISAYVDNHKPNKALEVFRLMQVDNVEPDQVTITVALSACADTGALEMGERIHDFVRRKQGMKKDLCLNNALINMYAKCGDIVTSRRLFDSTKNKDVTTWTSMIVGHALHGQAHEALQLFEEMNTRSEKKNLNSCSYLVTPNDVTFIGVLMACSHTGLVEEGKGHFRSMTEDYGIKPREPHFGCMVDLFCRAGHLRDAYEFILEMPAPPKAVIWRTLLGACSLHGELELGAEVRHKLLKLDPGYASDSVAMSNIYANKGMWDKKVIARNQIKQSRAPGCSSIEVGSELIECVTTDYNHPLKTNIICS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1064 454 Pfam PPR repeat 246 271 IPR002885 -
Lal17g1064 454 Pfam PPR repeat 217 242 IPR002885 -
Lal17g1064 454 Pfam PPR repeat 329 352 IPR002885 -
Lal17g1064 454 PANTHER - 111 451 - -
Lal17g1064 454 PANTHER - 41 143 - -
Lal17g1064 454 Pfam E motif 371 430 IPR046848 -
Lal17g1064 454 Pfam PPR repeat family 140 188 IPR002885 -
Lal17g1064 454 Gene3D Tetratricopeptide repeat domain 207 284 IPR011990 GO:0005515
Lal17g1064 454 PANTHER - 111 451 - -
Lal17g1064 454 PANTHER - 41 143 - -
Lal17g1064 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Lal17g1064 454 Gene3D Tetratricopeptide repeat domain 285 438 IPR011990 GO:0005515
Lal17g1064 454 Gene3D Tetratricopeptide repeat domain 40 206 IPR011990 GO:0005515
Lal17g1064 454 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Lal17g1064 454 TIGRFAM PPR: pentatricopeptide repeat domain 246 272 IPR002885 -
Lal17g1064 454 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1064 Lal-Chr17 9173682 9175046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1064 77 446 Glycoside Hydrolase AT3G49170 35.657 4.42e-73 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1064 - - lang:109327537 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1064 17 9173682 9175046 Lal17g1064 17 9173682 9175046 ECH