Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g1003 ATGTCGACTCCTTCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGTTGCAACAAGACCCGCCTGCCGGAATCAGTGGTGCACCACATGATAACAATATAATGGTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGACTCTCCAATTTTCTGAGGATTATCCAAACAAACCGCCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACATTTATGCAGATGGAAGTATCTGTCTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACATCTATCCAGAAGGATTTCAATCATTTAGCCATGTTCTTTCCTTGGATATTGATCTCACATAAAGCCAGTACTGCCTTAGGTTCGACATGGGAACAAAGGGTGTTCCTGTTACTCACAATTTCAGGTGGAAAATCATGCAACTGCATACCACTTTCACAAAATTTCAACAACAGTGTTGGAAGTGAAGAGTCGTTGTTGTGCGATCCTAACCCAAATTCTCCGGCAAACGCAGAAGCTGCTCGGATGTTTAGTGAAAACAAGCGTGAGTACAACCGTAGAGTGAGGGAAAGTGTGGAGCAGAGTTGGACAGCTGATTAA 639 0.4241 MSTPSRKRLMRDFKRLQQDPPAGISGAPHDNNIMVWNAVIFGPDDTPWDGGTFKLTLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQKDFNHLAMFFPWILISHKASTALGSTWEQRVFLLLTISGGKSCNCIPLSQNFNNSVGSEESLLCDPNPNSPANAEAARMFSENKREYNRRVRESVEQSWTAD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g1003 212 CDD UBCc 7 205 IPR000608 -
Lal17g1003 212 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 210 IPR000608 -
Lal17g1003 212 SUPERFAMILY UBC-like 1 115 IPR016135 -
Lal17g1003 212 Gene3D Ubiquitin Conjugating Enzyme 125 212 IPR016135 -
Lal17g1003 212 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 111 - -
Lal17g1003 212 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 167 212 - -
Lal17g1003 212 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 111 - -
Lal17g1003 212 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 167 212 - -
Lal17g1003 212 Gene3D Ubiquitin Conjugating Enzyme 1 122 IPR016135 -
Lal17g1003 212 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Lal17g1003 212 SUPERFAMILY UBC-like 171 210 IPR016135 -
Lal17g1003 212 SMART ubc_7 7 210 - -
Lal17g1003 212 Pfam Ubiquitin-conjugating enzyme 8 111 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g1003 Lal-Chr17 8128061 8131555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g1003 7 109 Miscellaneous Gene Families AT1G17280 31.481 4.42e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g1003 K10573 - vvi:100261243 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g1003 17 8128061 8131555 Lal17g1003 17 8128061 8131555 ECH