Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0993 ATGCAGAATATGTTGCGATCGAAGCAGATCAGTGCCCTTTCTAGCAGTGCTAGGAGTTTTTTCCTCAGTGGCTCACGGTGTAACGGAGCGGATGGCAATTCATGCACTTGTGCCGAGGATGAAACATGTGTGTCAAGAAGACGGGAGAGGAAAAATGAAGTTTTAAATGTTCAGAAGCCAGCCTCCGTAGTATCCAAAGCTACATCTGGAGTAGAAGGAAACCTGGTGTCTGGAAACCTGGTAAATAGACCAGCTTCCACCAAGGGTGAGTTAGTAGTTCGATCTGTTTCTGGACAACAAGTCAGGTCTACTCCAAGCCCATCAAGTACATCAGGTTCTGTGACATATGCTTGTGTGGCTGATGGTGTTCAGAACCATGTTGACACATCTCTTAATGCTGACCAGTTTTACAGGGCCGGTATTGCCGCTGTCAGTTTTCTTTCTGATTTAGTTAACTATAAGCTTCCTTTATCAGATGGGATGGGAATACTAGGCAACTCTAAAAATTGTGTGGTTGATCCTGCTAGGACCCTACCCAGCATCAGATCTTCAACTGTGAAACAAATTAGAAAGGAGGATTTTATTGCTGTTCATCCAAAACCACCCGTTTCTGCTCAGCCAGGGCCATCAAACCATAATTACCATGGTGCAAAGGGAAAAGGTGATAAACCAAATTCATCTAGAGGATATAAACATGCTGCTTCTTCAGGGTCAGAGAAGTCAGGGGTTACTTCAAATATTCCTCTAAATAATAATGACCGTAGAGCCTTGCCACCGAGAACAAGAACTTATTCAAACCGCTCAGTGACAAATTTTGGTTCCTACATACAAAATTCAAATCCGCAGGTGTCGAGTTCATTCAAGGAAAGTTTTAATAAACACTCCAGGGAATTGAAAATGCCAGCAGGGATTGCTCTTTCAAACAGGCATTTTTCAAACACGGGGCGTGCTGTCGATGTGGTTTCAGATATACTGAGACAGTTAAGGTGGTGTCCTGCTACAGAGAAGGCTCTTTGCAACCTTAATTTTTCATTAGATCCATATCAAGCTAATCAAATCCTCAAGCAACTTCAAGACCATTCAGTTGGTTTAAGCTTTTTTTACTGGTTAAAGCGACAAGCAGGTTTCTTTCATGATGGGCATACTTATACCACCATGGTTGGTATCCTGGGCCGTGCAAAACAGTTTGGTGCAATTAAAATATTGCTGGAGCAGATGGTCAGTGATGGATGCAAGCCCAATGTTGTAACATATAATCGTTTGATTCACAGCTATGGCCGTGCGAACTACCTGAAAGAAGCACTGAATGTATTCAATCAAATGCAGGAGGTAGGATGTAAGCCTGATCGTGTGACTTACTGTACACTCATTGATATCCATGCCAAAGCTGGATATCTTGATGTTGCCATGTCTATGTATGAACGAATGCAAGAAGCTGGCCTTTCTCCCGACACATTCACTTACAGCGTGATAATCAACTGCCTTGGAAAATCTGGTAATTTAGCTGCTGCCCATAGGCTATTTTGTGAGATGGTTGATCAGGGTTGTGTTCCTAATCTAGTCACCTACAATATCATGATTGCTTTGCAAGCTAAAGCAAGAAACTATGAGACAGCATTGAAACTATATCGCGACATGCAGAATGCAGGATTTGCACCAGACAAAGTCACTTACAGCATAGTAATGGAGGTGCTTGGCCACTGTGGGTATCTTGAGGAAGCAGAAGCAGTTTTTGTTGAGATGAAACGAAAGAATTGGGTGCCGGATGAACCTGTTTATGGTCTTCTAGTAGACCTGTGGGGTAAGGCTGGTAATGTTGAGAAAGCTCGGGAATGGTATCAGGCAATGCTGAGTGCAGGTTTGTGTCCAAATGTACCAACAAGCAATTCTCTTCTCAGTGCATTCCTCAGGGTGCATAGGTTGTCAGATGCATATAATCTTCTTCTAAACATGGTGTCTCTCGGCCTAACCCCTACTTTACAGACGTATACTTTGCTCCTCAGTTGTTGTACAGAGGCACAATCATCATATGATATGGGTTTCTGTTGTGAGCTTATGGCAATTACTCGTCATCCTGCACATACATTTTTACAGTCTATGCCATCAGCGGGACCTGATGGTCAAAATGTCCGTGATCATGTAAGCAAATTCTTGGACTTGATGCATTCCGAAGATAGAGAGGGCAAAAGAGGACTAGTAGATGCCGTGGTGGATTTTCTTCACAAAACTGGACTCAAGGAAGAAGCTGGTTCGGTTTGGGAGGTGGCGGCTCAAAGAAATGTATATCCAGATGCTGTCAAGCAGAAAAGTTCTTGTTACTGGCTTATAAATCTTCATGTTATGTCGGATGGAACTGCTGTAACAGCATTGTCTAGGACACTTGCTTGGTTCCGCAGACAGATGCTGATATCTGGGGTTGGTCCCAGCCGGATCGATATCGTTACTGGATGGGGTCGTAGGAGCAGGGTGACAGGTACTTCTTTAGTGAGGCAGTCTGTTCATGAACTGCTGCATATGTTTAGTTTCCCATTCTTCACCGAAAATGGAAATTCCGGTTGTTTCGTGGGATGTGGCGAGCCTCTTAGTCAATGGTTGCAGCACTCATACGTGGAGCGAATGCATTTGCTGTAG 2631 0.4367 MQNMLRSKQISALSSSARSFFLSGSRCNGADGNSCTCAEDETCVSRRRERKNEVLNVQKPASVVSKATSGVEGNLVSGNLVNRPASTKGELVVRSVSGQQVRSTPSPSSTSGSVTYACVADGVQNHVDTSLNADQFYRAGIAAVSFLSDLVNYKLPLSDGMGILGNSKNCVVDPARTLPSIRSSTVKQIRKEDFIAVHPKPPVSAQPGPSNHNYHGAKGKGDKPNSSRGYKHAASSGSEKSGVTSNIPLNNNDRRALPPRTRTYSNRSVTNFGSYIQNSNPQVSSSFKESFNKHSRELKMPAGIALSNRHFSNTGRAVDVVSDILRQLRWCPATEKALCNLNFSLDPYQANQILKQLQDHSVGLSFFYWLKRQAGFFHDGHTYTTMVGILGRAKQFGAIKILLEQMVSDGCKPNVVTYNRLIHSYGRANYLKEALNVFNQMQEVGCKPDRVTYCTLIDIHAKAGYLDVAMSMYERMQEAGLSPDTFTYSVIINCLGKSGNLAAAHRLFCEMVDQGCVPNLVTYNIMIALQAKARNYETALKLYRDMQNAGFAPDKVTYSIVMEVLGHCGYLEEAEAVFVEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAREWYQAMLSAGLCPNVPTSNSLLSAFLRVHRLSDAYNLLLNMVSLGLTPTLQTYTLLLSCCTEAQSSYDMGFCCELMAITRHPAHTFLQSMPSAGPDGQNVRDHVSKFLDLMHSEDREGKRGLVDAVVDFLHKTGLKEEAGSVWEVAAQRNVYPDAVKQKSSCYWLINLHVMSDGTAVTALSRTLAWFRRQMLISGVGPSRIDIVTGWGRRSRVTGTSLVRQSVHELLHMFSFPFFTENGNSGCFVGCGEPLSQWLQHSYVERMHLL 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0993 876 PANTHER BNAA07G31720D PROTEIN 4 876 - -
Lal17g0993 876 Gene3D Tetratricopeptide repeat domain 475 549 IPR011990 GO:0005515
Lal17g0993 876 Gene3D Tetratricopeptide repeat domain 343 474 IPR011990 GO:0005515
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 451 485 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 486 519 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 416 449 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 556 590 IPR002885 -
Lal17g0993 876 TIGRFAM PPR: pentatricopeptide repeat domain 592 625 IPR002885 -
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Lal17g0993 876 Pfam PPR repeat 480 512 IPR002885 -
Lal17g0993 876 Gene3D Tetratricopeptide repeat domain 561 679 IPR011990 GO:0005515
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Lal17g0993 876 SUPERFAMILY HCP-like 418 620 - -
Lal17g0993 876 MobiDBLite consensus disorder prediction 229 264 - -
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Lal17g0993 876 SUPERFAMILY SMR domain-like 774 854 IPR036063 -
Lal17g0993 876 SMART SMR_2 773 865 IPR002625 -
Lal17g0993 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Lal17g0993 876 MobiDBLite consensus disorder prediction 199 264 - -
Lal17g0993 876 Pfam PPR repeat 382 411 IPR002885 -
Lal17g0993 876 Pfam PPR repeat 592 621 IPR002885 -
Lal17g0993 876 ProSiteProfiles Smr domain profile. 776 857 IPR002625 -
Lal17g0993 876 Pfam PPR repeat family 413 459 IPR002885 -
Lal17g0993 876 Pfam PPR repeat family 518 564 IPR002885 -
Lal17g0993 876 Pfam PPR repeat family 623 670 IPR002885 -
Lal17g0993 876 PANTHER OS03G0856100 PROTEIN 4 876 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0993 408 682 Miscellaneous Gene Families AT4G11690 26.148 4.40e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0993 - - lang:109341615 1679.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0993 17 8022109 8026213 Lal17g0993 17 8022109 8026213 ECH