Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0970 ATGATTTCCGATGCAATCTCCACTGCTCCAATTCCTTCAGCCGCGAGTACCAAGAATATTGGTAAAAAGAAGAGGACCAACAGGTCCGCAAAATTGAAGCAGTGTAAGATTGATGCACGTCGTGAACAATGGCTTTCTCAAGTTGCGGCCAAGAACAAGGGTTGCAGTGATGATGATGCTCGCACACCGATGAAAGGAAGCAATGGTTTGTTGGAGAAACTAGAAATGAGGAGTAGAGATGAAGAAGAGGATGAGGGATTGATTGGTCATGTCAGCTATTCTGAATCACTGTCAAACAGTCCCACCAGTGTTAGCAGTTGCGTTCATTCTGGGACAATTTTCACTGGTAGTTGCAGCAGCGGCAGCAGTAGTTGTAGTAGTACTTGCAGTGCTGGCTGCCGCTCTGGGAATGTCACAGAAGAAGAAGATGATGAATGCTTGGATGATTGGGAGGCTATGGCTGATGCTTTAGCCGCCAATGACAAGCCCCAAAACCCTTGTTCGGAGTTGCCCCCTGAGGCTGAAACTGTAGTCAAAATGGTTTTGCCAGGTGAACTGATTAGTGGGTTGAATGCAGGGCCTCAGAATTGGAAACCAGCTAGTGCTACTTTAGTTCCTTGTTCATCTGGTAATGGTCGAGCTTGGAGACCTGATGATACTTTTCGCCCTCAGTGTTTGCCTAACCTTTCTAAGCAGCATAGTTTAGGAAACCCTGATAGGCGTTGTGGAGGAGGGGTACCCTGGGCTTTCACTGCTTCACCATCATCTTGTCCAATTTGCTGCGAGGATCTTGATTTGACAGACTCTAGCTTCTTGCCATGCTTGTGTGGATTCCGGATCTGCCTCTTTTGTCACAAGAGGATTCTTGAGGAGGATGGCCGCTGTCCTGGGTGCAGGAAGCAGTATGAGTGTGAACCTGTTGAGACAGAGGCAAGTGTGCATGGAGGCAGCCTGACTCTTCGGTTGGCCCGTTCGTGTAGCATGGTTGGAAGGTCATGA 999 0.4835 MISDAISTAPIPSAASTKNIGKKKRTNRSAKLKQCKIDARREQWLSQVAAKNKGCSDDDARTPMKGSNGLLEKLEMRSRDEEEDEGLIGHVSYSESLSNSPTSVSSCVHSGTIFTGSCSSGSSSCSSTCSAGCRSGNVTEEEDDECLDDWEAMADALAANDKPQNPCSELPPEAETVVKMVLPGELISGLNAGPQNWKPASATLVPCSSGNGRAWRPDDTFRPQCLPNLSKQHSLGNPDRRCGGGVPWAFTASPSSCPICCEDLDLTDSSFLPCLCGFRICLFCHKRILEEDGRCPGCRKQYECEPVETEASVHGGSLTLRLARSCSMVGRS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0970 332 SUPERFAMILY RING/U-box 251 307 - -
Lal17g0970 332 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 330 - -
Lal17g0970 332 Pfam RING/Ubox like zinc-binding domain 257 303 - -
Lal17g0970 332 MobiDBLite consensus disorder prediction 1 32 - -
Lal17g0970 332 ProSiteProfiles Zinc finger RING-type profile. 257 299 IPR001841 -
Lal17g0970 332 CDD mRING-HC-C4C4_CNOT4 257 300 IPR039515 -
Lal17g0970 332 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 8 330 IPR039780 GO:0004842|GO:0030014
Lal17g0970 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 314 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0970 Lal-Chr17 7862077 7863830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0970 - - var:108330419 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0970 17 7862077 7863830 Lal17g0970 17 7862077 7863830 ECH