Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0948 ATGTTCAACCAAATACTAACGAAAGTATCTCAACAAATCTCATTTGTTTTTCATTTACACCTTCTCCCTCCACCAAAACCCCGATTTCCGCTGCCACGTCACACCTCCACTGTACCCGAACTCCCATCGCCGCCGCAAGACGCCGCCATAGCCAAACTCATACTCGAATCAGACCCGGAATCCCTCTCTGAAGCCCTAACAAACCCCACATTCCAATGGACCCCACACCTCGTCGACCAGGTCCTGAAGCGTCTCTGGAATCACGGACCCAAAGCCCTGCAATTCTTCAAACACCTTGACTGCAACCCTTTATACACTCACTCCTCTTCTTCATTCGACCACGCCATCGACATCGCCGCCCGATTGCGCGACTATAGGACCGCCTGGACCCTCCTCCACCGGATGCGATCCCTCCGCTGCGGCCCCACACCTCGAACGTTCGCAATTATCGCCGAAAGGTATGTCTCCGCCGGAAAAGCTCATAGGGCTGTTAAGGTTTTCTTGTCAATGCACGAACACGGTTGTCGCCAGGATCTGAATTCCTTTAATACTATCCTCGATGTGTTGTGTAAGTCGAGGCGTGTTGAAATGGCGTATAGCTTGTTTAAAATGTTGAGGTCTAGGTTTAAGTGTGATAGTGTTACTTATAATGTAATTGCAAATGGTTGGTGCTTGATTAAGCGAACTCCGATGGCATTGCGGGTTTTGAAGGAGATGGTGGAAAGTGGAATTGAACCAACTTTGGTTACTTATAATATATTGCTTAAAGGGTACTTTAGGACTGGTCAGTTTCAGGAAGCTTGGAATTTCTTTTTGGAGATGAAGAAGAGGGAGTGTGAGATTGATGTTGTTACTTACACTACAATGGTTCATGGGTTTGGTGTTGGAGGTGAGGTTAAGAAATCAAAGAGGATTTTTGATATGATGGTTAGAGAGGGTGTGGTTCCTTCGGTTGCGACTTATAATGCTTTGATTCAGGTTTTGTGTAAGAAGGATAATGTGCAGAATGCAGCGTTGGTTTTTGAAGAGATGGTGAGGAAGGGGTGTATGCCTAATTTGACTACTTATAATGTTCTTATCAGGGGATTTTGTCATTCTGGTGATATGGAAAGGGCATTGGAGCTTATGGCAAGAATGGAGGAAGATGGCTGCCAGCCAAATGTTCAGACGTACAATGTTGTGATCCGTTACTTTTGTGATGCTGGGGACATTGAAAAGGGTTTGAACATGTTTGAAAAGATGGGGGATGGGTCATGCTTGCCCAATCTGGACACATACAACATTCTGATTGGTGCAATGTTTGTGAGGAAGAAATCAGACGATTTGGTCGTGGCTGGGAAGTTGTTGATAGAGATGATTGATAGAGGGTTTTTGCCCCGAAAATTTACTTTTAATCGGGTGTTGAATGGACTTGCTCTAACAGGCAATCAAGATTTTGCAAAGGAGATAATGAGAATGCAGAGCGGGTGCGGTCGAGTCCCTCATCCTAAAGTTGGAGGCGGTGTCGGTGGAACTTGA 1518 0.4572 MFNQILTKVSQQISFVFHLHLLPPPKPRFPLPRHTSTVPELPSPPQDAAIAKLILESDPESLSEALTNPTFQWTPHLVDQVLKRLWNHGPKALQFFKHLDCNPLYTHSSSSFDHAIDIAARLRDYRTAWTLLHRMRSLRCGPTPRTFAIIAERYVSAGKAHRAVKVFLSMHEHGCRQDLNSFNTILDVLCKSRRVEMAYSLFKMLRSRFKCDSVTYNVIANGWCLIKRTPMALRVLKEMVESGIEPTLVTYNILLKGYFRTGQFQEAWNFFLEMKKRECEIDVVTYTTMVHGFGVGGEVKKSKRIFDMMVREGVVPSVATYNALIQVLCKKDNVQNAALVFEEMVRKGCMPNLTTYNVLIRGFCHSGDMERALELMARMEEDGCQPNVQTYNVVIRYFCDAGDIEKGLNMFEKMGDGSCLPNLDTYNILIGAMFVRKKSDDLVVAGKLLIEMIDRGFLPRKFTFNRVLNGLALTGNQDFAKEIMRMQSGCGRVPHPKVGGGVGGT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0948 505 Gene3D Tetratricopeptide repeat domain 301 499 IPR011990 GO:0005515
Lal17g0948 505 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 34 494 - -
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Lal17g0948 505 PANTHER OS02G0679200 PROTEIN 34 494 - -
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 146 178 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 355 388 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 181 208 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 320 352 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 249 283 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 390 422 IPR002885 -
Lal17g0948 505 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Lal17g0948 505 Gene3D Tetratricopeptide repeat domain 206 300 IPR011990 GO:0005515
Lal17g0948 505 Gene3D Tetratricopeptide repeat domain 60 205 IPR011990 GO:0005515
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lal17g0948 505 Pfam PPR repeat 154 175 IPR002885 -
Lal17g0948 505 Pfam PPR repeat family 316 365 IPR002885 -
Lal17g0948 505 Pfam PPR repeat family 246 293 IPR002885 -
Lal17g0948 505 Pfam PPR repeat family 386 433 IPR002885 -
Lal17g0948 505 Pfam PPR repeat family 178 224 IPR002885 -
Lal17g0948 505 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 208 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0948 104 494 Miscellaneous Gene Families AT4G11690 27.806 9.52e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0948 - - adu:107473026 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0948 17 7629611 7634240 Lal17g0948 17 7629611 7634240 ECH