Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0897 ATGTTGATTCAATTTCATTGGCTCAACTCTGAACTCAGCAATGTTTGCAAGTCCTTGTTAAGGGTCAAGCAGTTACATGCTTTGCTTTTCAAGACATATCTCTCAAAAGACCCCTTTTATGCAACTAAAATTCTTAGGTTATATGCTTTTAACAATGACATTACCTCTGCATACCAAGTGTTTGACAAAACTCCTACTCGAAGTGTCTACCTTTGGAATTCCATGATTCGTGCTTTTGCTTGCTCCCGAAGATTTTCCGGTGCAATCTCTCTGTTTAGGACCATGCTTGGGGATGACATAAGTCCTGACAATTACACTTATGCTTGCGTTATACGTGCGTGCTCGGACAATTTTGATTTTGCTATGCTAAGACTTGTTCATGGAGGGTCTGTAGCTTCTGGTTTGGGATATGACCCTATTTGTTGCAGTGCACTTGTGACTGCTTATTCTAAACTTGGTTTTGTTAATGAAGCATGTAAAGTGTTTAATGTTATCGCGGAACCGGATTTGGTTTTGTGGAATTCACTGATTTCTGGTTATGGGTGCTCTGGTGCATGGGATAGAGGAATGCAAATGTTTAGTTCAATGAGACATGGAGGGAAGAAGCCAGATGAATATACACTGGCTGGGTTGCTTGTGGGTATTGGTGATGCTAGCTTGCTGAGTATTGGTCAAGGATTACATGGTTTAATTCTGAAATGTAGACTTGATTTTGATTCTCATGTAGGTAGTTTACTGGTGAGCATGTATTCGAGATGTAAGTGCATGGTTTCGGCATATAGAGTGTTTTGCAGTATTTTCCAACCTGATTTGGTCACATGGTCTGCTCTTATAGCTGGGTATTCCCAGTCTGGGGATGATGAGAAGGCACTGATCTTTTTCAGGAAATTAAGCATGCAAAACAAGAAGGCGGATTCTGTTTTGATTGCCAGTGTATTAGCTTCTATAGCTCAAACAGCATATGTAGGACCAGGGTGTGAGATACATGGTTATGTTCTTCGGCATGGATTAGAATCAGATGTCAGAGTCTCCTCTGCTCTCGTGGACATGTATTCAAAGTGTGGTTTCGTGCACTTAGGAATTTGTGTTTTCAGGATAATGCCAGAACGGAACATAATTTCTTATAATTCAGTAATTTCAGGTCTTGGCTTGAATGGATGTGCTTCTGAGGCTTTCAAGATGTTTCATAAGATTTTAGAGAAAGGATTAGTGCCTGATGAAGCCACGTTTTCTGCCCTTCTTTGTGCTTGTTGTCATGCTGGCCTTGTCAAAGATGGCCGGGAGATTTTCCGGAGAATGAAAGACGAATTTGACATCAAACCTAGGCCTGAGCACTATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGAGTTAGAAGAGGCTTACAAACTCATGCAGTCCTTACCAGAACCAATAGACAAGGCCATCCTAGGAGCCTTATTATCATGCTGTAATTCTTGTGGAAATTCTGATCTGGCAGAAATTGTAGCTCAGCAGCTTTTTAAAAGTAATCCTGATGATAACGTTTACAAGGTTATGCTTTCTAATATATATGCTGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGAGATAAAATAACAACTGTAACTCCTGTCAGATATAAAGAGGCCTCTCACAAAGAGATAAGTGTTCATAGAGGGTGCCATGTCACAACAGTACGGTCATTGTCTTCTGACCTGAAAGCTGGAGGTCATGTGTTTAAACAGCCCCTCGGCTTGTGGCGTAAGGGTATACATATGCTCTCCCCAAAATTAGGTGGGAGTCTCATGCACCTGGTCACGTTTTTTAGATAG 1821 0.4141 MLIQFHWLNSELSNVCKSLLRVKQLHALLFKTYLSKDPFYATKILRLYAFNNDITSAYQVFDKTPTRSVYLWNSMIRAFACSRRFSGAISLFRTMLGDDISPDNYTYACVIRACSDNFDFAMLRLVHGGSVASGLGYDPICCSALVTAYSKLGFVNEACKVFNVIAEPDLVLWNSLISGYGCSGAWDRGMQMFSSMRHGGKKPDEYTLAGLLVGIGDASLLSIGQGLHGLILKCRLDFDSHVGSLLVSMYSRCKCMVSAYRVFCSIFQPDLVTWSALIAGYSQSGDDEKALIFFRKLSMQNKKADSVLIASVLASIAQTAYVGPGCEIHGYVLRHGLESDVRVSSALVDMYSKCGFVHLGICVFRIMPERNIISYNSVISGLGLNGCASEAFKMFHKILEKGLVPDEATFSALLCACCHAGLVKDGREIFRRMKDEFDIKPRPEHYVYMVKLLGSAGELEEAYKLMQSLPEPIDKAILGALLSCCNSCGNSDLAEIVAQQLFKSNPDDNVYKVMLSNIYAGDGRWDDVKKLRDKITTVTPVRYKEASHKEISVHRGCHVTTVRSLSSDLKAGGHVFKQPLGLWRKGIHMLSPKLGGSLMHLVTFFR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0897 606 Gene3D Tetratricopeptide repeat domain 8 125 IPR011990 GO:0005515
Lal17g0897 606 Gene3D Tetratricopeptide repeat domain 327 424 IPR011990 GO:0005515
Lal17g0897 606 Gene3D Tetratricopeptide repeat domain 228 322 IPR011990 GO:0005515
Lal17g0897 606 Pfam PPR repeat family 68 114 IPR002885 -
Lal17g0897 606 Pfam PPR repeat family 371 419 IPR002885 -
Lal17g0897 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lal17g0897 606 Pfam PPR repeat 272 297 IPR002885 -
Lal17g0897 606 Pfam PPR repeat 171 198 IPR002885 -
Lal17g0897 606 Pfam PPR repeat 141 163 IPR002885 -
Lal17g0897 606 Gene3D Tetratricopeptide repeat domain 126 225 IPR011990 GO:0005515
Lal17g0897 606 Pfam E motif 490 535 IPR046848 -
Lal17g0897 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Lal17g0897 606 Gene3D Tetratricopeptide repeat domain 425 568 IPR011990 GO:0005515
Lal17g0897 606 TIGRFAM PPR: pentatricopeptide repeat domain 171 205 IPR002885 -
Lal17g0897 606 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Lal17g0897 606 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Lal17g0897 606 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Lal17g0897 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Lal17g0897 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Lal17g0897 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lal17g0897 606 PANTHER OS01G0545900 PROTEIN 6 539 - -
Lal17g0897 606 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0897 Lal-Chr17 6946243 6953148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0897 52 542 Glycoside Hydrolase AT3G49170 29.980 2.02e-73 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0897 - - gmx:100820049 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0897 17 6946243 6953148 Lal17g0897 17 6946243 6953148 ECH