Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0890 ATGTCAAGTGAGCTTGTGGAAAACACGCTGATTCATGTCTATGCTGTGTGTGATGCAGTTGAGGTTGCTAGAAGGGTGTTTGATAAAATGCCGGAGAGGGGAATTGTTGCTTGGAATGCTATGCTTGCTGGGTATGCTAAGAGCGGTTGCTGGGATGAGGTTGTGGGCTTGTTTCTTAGGATGAAGAAACCATGTGGTGTTAATGTTAATGATGTAAGGTTTGATGATGTTAGCTTGATTATTGTCTTGTCCGCGTGTGGTAGGTTGGCGAATTTGGAATTAGGAGAATGGATTGGAGATTACGTTGAGGCAAATGGACTTAGTAGAAACCTTACTTTGATGACTTCACTGCTTGATATGTATGCAAAATGTGGTAATGTTGACAAAGCAAGAGTGGTGTTTGATCAATTGGAACGTAGAGATGTTGTTGCATGGAGTGCCATGATATCTGGGCATAGTCAAGCTAACAGGTGCAGTGAGGCTCTTGATTTGTTTCATGAGATGCAGAAGGCTAATGTGGAGCCTAATGAGGTTACCATGGTTAGTGTGCTATACTCATGTGGGGTTCTTGGAGCTATGGAAACTGGTAAATGGGTTCATTTCTATGTAAGAAGAAACAAACTGAAGCTCACTGTCACTCTTGGGACTGCACTCATAGACTTCTATGCAAAATGTGGGTCTATAGAGAGTGCAATTGAGGTTTTTGAGAAAATGCGGGTGAAGAATGTGTTCTCTTGGACAGCGATAATTCACGGACTTGCTAGCAATGGTGAGGGAAGAAGAGCTCTAGAGTTGTTTCATTTGATGAAAGAAGCAAATGTTGAACCAAATGACGTGACTTTCATCGGTGTGCTTTCGGCTTGTAGCCATGTGGGTTTGGTTAAGGAAGGTCAAGCAGTTTTCCTTAGTATGAGTAAAGATTTCGGGATCAAACCTAGAATAGAGCACTATGGTTGCATGGTTGATATTCTTGGTCGAGCTGGTTTGATTAATGAAGCTTTTCAGTTTATTAAGAACATGCCTATTGAACCAAACGTAGTTGTTTGGAGGACATTGTTGGCTTCTTGTAGGGCACATAAAAATGTTTTAATCGGCGAGGAATCGTTTAGACGGATAACTGAATTGGAGCCTGCTCATAGCGGGGACTACATACTGCTATCAAACATATATGCCTTGGTGGGGAAAAGTGAAGATGCTCTTAGAGTGAGGTCTCAGATGAGAGAGATGGGGATTAAGAAGTCACCTGGTTGTACCATGATTGAATTGGAAGGTGTGGTTCACGAATTTTTTTCCGAAGATGATGAACATTCTCACTCAAAAGAGATATATATGGCAACTGAAGAGATGATCAAAAGAATTAAATCAGTGGGGTATGAGCCAAACATTGCAGATGCAAGAATTGATGCAGAAGAGGAAGATAAAGTAGTTTCTGTGTCTCACCATAGTGAGAAGCTAGCTATTGCATTTGGTCTTATCAAAACTAAAGCCAGGGCTACCATTAGATTATCGAAAAACCTTAGAGTTTGTACTGATTGTCACAATGCCACAAAGTTAATATCTAAGGCCTCACAATCTAGTACCGAACTGGACAATCTAGTACTGGAGAGGATCTCAACCCGTTAA 1623 0.4128 MSSELVENTLIHVYAVCDAVEVARRVFDKMPERGIVAWNAMLAGYAKSGCWDEVVGLFLRMKKPCGVNVNDVRFDDVSLIIVLSACGRLANLELGEWIGDYVEANGLSRNLTLMTSLLDMYAKCGNVDKARVVFDQLERRDVVAWSAMISGHSQANRCSEALDLFHEMQKANVEPNEVTMVSVLYSCGVLGAMETGKWVHFYVRRNKLKLTVTLGTALIDFYAKCGSIESAIEVFEKMRVKNVFSWTAIIHGLASNGEGRRALELFHLMKEANVEPNDVTFIGVLSACSHVGLVKEGQAVFLSMSKDFGIKPRIEHYGCMVDILGRAGLINEAFQFIKNMPIEPNVVVWRTLLASCRAHKNVLIGEESFRRITELEPAHSGDYILLSNIYALVGKSEDALRVRSQMREMGIKKSPGCTMIELEGVVHEFFSEDDEHSHSKEIYMATEEMIKRIKSVGYEPNIADARIDAEEEDKVVSVSHHSEKLAIAFGLIKTKARATIRLSKNLRVCTDCHNATKLISKASQSSTELDNLVLERISTR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0890 540 Gene3D Tetratricopeptide repeat domain 5 63 IPR011990 GO:0005515
Lal17g0890 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 140 IPR002885 -
Lal17g0890 540 Pfam PPR repeat 8 35 IPR002885 -
Lal17g0890 540 Pfam PPR repeat 36 63 IPR002885 -
Lal17g0890 540 Pfam PPR repeat 316 340 IPR002885 -
Lal17g0890 540 Gene3D Tetratricopeptide repeat domain 216 521 IPR011990 GO:0005515
Lal17g0890 540 Gene3D Tetratricopeptide repeat domain 67 205 IPR011990 GO:0005515
Lal17g0890 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 34 64 IPR002885 -
Lal17g0890 540 Pfam PPR repeat family 140 186 IPR002885 -
Lal17g0890 540 Pfam PPR repeat family 241 289 IPR002885 -
Lal17g0890 540 TIGRFAM PPR: pentatricopeptide repeat domain 143 177 IPR002885 -
Lal17g0890 540 TIGRFAM PPR: pentatricopeptide repeat domain 244 277 IPR002885 -
Lal17g0890 540 TIGRFAM PPR: pentatricopeptide repeat domain 115 143 IPR002885 -
Lal17g0890 540 TIGRFAM PPR: pentatricopeptide repeat domain 216 242 IPR002885 -
Lal17g0890 540 TIGRFAM PPR: pentatricopeptide repeat domain 36 63 IPR002885 -
Lal17g0890 540 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN CHLOROPLASTIC 3 519 - -
Lal17g0890 540 Pfam E motif 359 421 IPR046848 -
Lal17g0890 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Lal17g0890 540 Pfam DYW family of nucleic acid deaminases 457 524 IPR032867 GO:0008270
Lal17g0890 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Lal17g0890 540 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0890 Lal-Chr17 6869432 6872071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0890 6 532 Glycoside Hydrolase AT3G49170 37.383 3.33e-118 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0890 - - lang:109327354 999.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0890 17 6869432 6872071 Lal17g0890 17 6869432 6872071 ECH