Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0878 ATGGCTAGCCAACTTCGACCTAATAATAATAAGATGCATCAAAAGAGGGAGCGACGTTTGTTCTCTACATCTGATGATAGTGTTATGATGAAACAAGTTCAAGCCACACATGCCCCTGATGGTCGTGAAGTTGATGTCAAACCCATTTTCCAAATCTTAGATGAAATCTTCATTCAAATCATTGCTAGAAATGTTGAGGGTCACCATGAAAAACGAGAACAAGAGACGTTGGAAACTGCTGCTGTTTTGGCTGAATTTGACATGCTTGATTCGCTGGCTTTTATCATACAAAAAATTTCATGCGAGCTATCATGTAAGTGTTCTGGAGGAGGAGATGCACATGCATCAACCATGGTGTTACTGAATTATTTATCTAACTATTCATGGCATGCAAAAGTTGTGTTAACCCTAGCAGCATTTGCTGTTATTTTTGGAGAGTTTTGGCTTGTTACTCAGATGAGTGCTGAAAATACACTTGCCAAGTCAATTTCTCTTCTTAAGCAATTGCCTGACATTGTGGAGAATTCAACTTTTTTGAGACCACAATTTGATGCACTCAACAAGCTTGTGAAAGTGGCTATGGATGTGACCATTTGCATTGTTGAATTCAAGGAGTTACCCTCTGAATATATCTCAGAGGACACACCTCCTATGTCCATTGCTAGTACTCATATTCCTATTGCTGCTTATTGGGTCATTAGAAGTATTGTGGCTTGTGCCTCTCAAATTGAAAGTCTCATAGGCATGAGAAATGAGTCCATTGCATCTGCCACAGAGGCATGGGAATTAACCAGTTTGGCTCACAAAGTCAATAGTATATATGAGCACCTCAAGAACCAATTGGCTCAGTGCTATGTATACATAGATGGTAAGAGGCATATGGAGGCTTTCCATAATCTGATACATCTTTTTGAGTTGGTCCATGTAGACAACATGAAAATTCTCAAAGCACTTATATATGCTAAGGATGATCATCCCCCACTTATACAAGGAACTACCAAATCAAAGGCTAATCTTGAGGTGCTAAGGAGGAAAAATGTGTTACTCCTCATATCAGATTTGGATCTTTCACAAGAAGAGATTATGATACTTGATAACTTGTACAAAGATGCACAATCTAGGGGTGAGACACACTATGAAATTGTATGGATTCCAATTGTGGACAAAGCAACATGGAATAATGATGTGAATAGAGAGAAGTTTGAGTATTTGCAATCATTGATGGCATGGTACAGTGTGCATGACCCATTCATTATTGAACCATCAGTTATTAAGTATATCAAAGAAATGTGGAATTTCACAAAGAAAGCCATTGTAGTTGCCCTTGATCCACAAGGTAGATTGTCCTCTCCAAATGCTCTTCATATGATATGGATTTGGGGGAATTTGGCATTTCCATTCACACGTGAGAAAGAAGAATCCTTGTGGAAGCAAGAGCTTTGGACCCTTGAACTTCTTATTGATGGCATTGATCCTATGGTTTTGGAATGGATGGCAGAAGGTAAATTCATATGTCTTTATGGAGGTGAAGATCTTGAATGGATTCAAACATTCACAACCACAGCAATGAATGTTGCAAAAGCTGGTAGATTCGAATTAGAGATGGTTTATGTAGGAAAGAGCAATGCCAAAGAGAGGATGCAGAAAATGATCAAAACCTTTGCCACAAGAAAGTTCAGTTACTATTGGCCTAATGTCACATCCATTTGGTTCTTTTGGGCAAGGTTAGAAAGCATGCTATACTCAAAGTTGCAACACGGTAGAACTGTTGAAAATGACCAAATCATGAGTGAAGTAATGACTGTACTTAGCTTTGATGGTAGTGATCAAGGTTGGGCTATTTTCTGTAGAGGTGCAGCTGAAATGGCTAGGGCTAAAGGTGACACTGCTTTAACAAGTTTGAGAGATTTTGATAAGTGGAAAGATAATATTGAGAATGATGGTTTTGTTCCAGCACTGAAGGATTACCTGAACCAGCTTCATACCCCTCATCACTGCAATAGGCTTATACTTCCTGGGAGCACTGGTGGCATACCAGAAAAGGTTGTGTGTGCTGAATGTGGTAGACAAATGGAGAGATATTTTATGTACCGATGTTGTGTGGAATAA 2109 0.3902 MASQLRPNNNKMHQKRERRLFSTSDDSVMMKQVQATHAPDGREVDVKPIFQILDEIFIQIIARNVEGHHEKREQETLETAAVLAEFDMLDSLAFIIQKISCELSCKCSGGGDAHASTMVLLNYLSNYSWHAKVVLTLAAFAVIFGEFWLVTQMSAENTLAKSISLLKQLPDIVENSTFLRPQFDALNKLVKVAMDVTICIVEFKELPSEYISEDTPPMSIASTHIPIAAYWVIRSIVACASQIESLIGMRNESIASATEAWELTSLAHKVNSIYEHLKNQLAQCYVYIDGKRHMEAFHNLIHLFELVHVDNMKILKALIYAKDDHPPLIQGTTKSKANLEVLRRKNVLLLISDLDLSQEEIMILDNLYKDAQSRGETHYEIVWIPIVDKATWNNDVNREKFEYLQSLMAWYSVHDPFIIEPSVIKYIKEMWNFTKKAIVVALDPQGRLSSPNALHMIWIWGNLAFPFTREKEESLWKQELWTLELLIDGIDPMVLEWMAEGKFICLYGGEDLEWIQTFTTTAMNVAKAGRFELEMVYVGKSNAKERMQKMIKTFATRKFSYYWPNVTSIWFFWARLESMLYSKLQHGRTVENDQIMSEVMTVLSFDGSDQGWAIFCRGAAEMARAKGDTALTSLRDFDKWKDNIENDGFVPALKDYLNQLHTPHHCNRLILPGSTGGIPEKVVCAECGRQMERYFMYRCCVE 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0878 702 Pfam Sieve element occlusion C-terminus 471 700 IPR027944 -
Lal17g0878 702 Pfam Sieve element occlusion N-terminus 24 308 IPR027942 -
Lal17g0878 702 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 8 701 IPR039299 GO:0010088
Lal17g0878 702 MobiDBLite consensus disorder prediction 1 23 - -
Lal17g0878 702 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 8 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0878 Lal-Chr17 6732798 6738558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0878 - - gmx:100811452 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0878 17 6732798 6738558 Lal17g0878 17 6732798 6738558 ECH