Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0871 ATGCTCAAATCAACCTTCACTCCAATTCTCTGTGTCCTTTTCCCAAAACCCAAATCCTCAAAACTATCATCATACATTATCACCAACACCTTCACAAATAGCACACCACCTGTTCGACAAAATGCCTCACTCAAACACCACTCCCCAATTATCACCCACCCTTCCTCAGCTTACATTCACCTCCCTTTCTGCCGCAAACGCTGCCACTATTGTGACTTCCCCATTGTTGCTCTTGGCTCTGCTTCAATGCAAATCGACGACGACCCCCGAGTTTTAAACTATGTACAGTGGCTCTGCAGAGAAATCAATACAACCAAAGTAGAATTTGATGATAAAACATCCCTTGAGACGGTGTTTTTCGGAGGTGGAACACCTTCCCTCGTGCCTCCGAGGATGGTTTCTACTATATTGGAGACTCTGCGGATGAAGTTTGGGTTGAGTGAGAATGCTGAAATATCAATGGAAATGGACCCTGGCACGTTTGATGTTAAGAAAATGCAGGAGATGATGGTGTTGGGAGTGAACAGAGTGTCTTTGGGAGTTCAGGCATTTCAAGAGAAACTTTTGAGTTCTTGTGGGAGGGCACATGGTTTGAAAGAGGTTCACGAGGCTATCGATATTGTCAAGTCGTGTCGGGTTGAGAATTGGAGTATAGATCTTATAGCTTCATTGCCTCATCAGACATGTGACATGTGGGAGGAAAGTCTAAGGCTCACCATTGAGGCACAACCAACTCATGTTTCTGTTTATGATTTGCAAATTGAGCAAGGAACAAAATTTGGAAACTTGTATACACCAGGCGAATTTCCGCTGCCTTCTGAGATGCAATCAGCTGATTTCTATAAGATGGCTTCGAGAATGCTCGGTGACGCGAACTATAACCATTATGAAATCAGCAGCTACAGTAAGAGTGGATATGAATGCAAACACAATTCTATCTATTGGAAGAACAAGCCTTTCTATGGCTTTGGCCTTGGCTCTGCTAGTTTTATTGGTGGGTTGAGGTTTTCACGACCGAAGAAACTGAATGATTACATGAATTTCGTACGAAATTTGGAAAATGGGTTAGTGAGTAGTTCTGCTGGTGACCACATTCATTGCAAGGACACAGCCATGGATGTGGTGATGCTGTCCCTAAGAACTGCAAGAGGCCTAGACTTAGAGTCTTTTAAAGAATCATATGGCAACTCTATTGTTTTCTCTGTGCTTGAGGCTTATAAACCTTATGTTGAGAGTGGACATGTGAGTTGTTTAGATGAGAATAGGAAATCCATTAGAATAGATGACCTTGATGATTATCTATTGGATGAAAGTAACCCAGAAAGAAGGCTGGCCTATATTCGGCTAAGTGACCCAGAAGGTTTCCTCTTATCAAATGAGTTAATATCCCTTGCTTTTAGGGCCATTGACTCTTAG 1416 0.4258 MLKSTFTPILCVLFPKPKSSKLSSYIITNTFTNSTPPVRQNASLKHHSPIITHPSSAYIHLPFCRKRCHYCDFPIVALGSASMQIDDDPRVLNYVQWLCREINTTKVEFDDKTSLETVFFGGGTPSLVPPRMVSTILETLRMKFGLSENAEISMEMDPGTFDVKKMQEMMVLGVNRVSLGVQAFQEKLLSSCGRAHGLKEVHEAIDIVKSCRVENWSIDLIASLPHQTCDMWEESLRLTIEAQPTHVSVYDLQIEQGTKFGNLYTPGEFPLPSEMQSADFYKMASRMLGDANYNHYEISSYSKSGYECKHNSIYWKNKPFYGFGLGSASFIGGLRFSRPKKLNDYMNFVRNLENGLVSSSAGDHIHCKDTAMDVVMLSLRTARGLDLESFKESYGNSIVFSVLEAYKPYVESGHVSCLDENRKSIRIDDLDDYLLDESNPERRLAYIRLSDPEGFLLSNELISLAFRAIDS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0871 471 Pfam Radical SAM superfamily 59 238 IPR007197 GO:0003824|GO:0051536
Lal17g0871 471 SMART MiaB 54 283 IPR006638 GO:0003824|GO:0051536
Lal17g0871 471 ProSiteProfiles Radical SAM core domain profile. 46 291 IPR007197 GO:0003824|GO:0051536
Lal17g0871 471 PANTHER COPROPORPHYRINIGEN III OXIDASE 37 468 IPR034505 -
Lal17g0871 471 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 56 410 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Lal17g0871 471 SFLD HemN-like, clustered with heat shock genes 53 420 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Lal17g0871 471 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 37 468 - -
Lal17g0871 471 SFLD Radical SAM 53 420 IPR007197 GO:0003824|GO:0051536
Lal17g0871 471 Gene3D tm_1862 like domain 62 275 IPR023404 -
Lal17g0871 471 SUPERFAMILY Radical SAM enzymes 25 417 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0871 - K07739 pvu:PHAVU_009G169000g 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0871 17 6635419 6637920 Lal17g0871 17 6635419 6637920 ECH