Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0829 ATGAAGAGAAAGAGAGAAGGAGAAGCGATAATGGATATAGTGTGGCAGACCCCAGCGAATCCCCTACACCCTCAAGATTACATTTTTCGCAACGGGATACGATACGTTAAACCATACTACTTCGAGTTTATAGCTCATGTTAAAAATCGATGGGCTGGGAAAACTATCGTTGATTTGTTCGCTGATGAGTTTAAAGGTCGACCTTATGAATATTATGTTAGTGCAGTAAAATGTGGAAGGATTCAAGTTGACGGAGAGATGGTGCCGGTTTCATACATGGTTAAATCATCTCAAAAGTTAAGCCATTTTGTACACAGGCATGAACCACCAGTGATGGCTTGCGATGTTCCGATTCTTCGAAAAGAACTGGATGTGCTAACAGTTTGTAAACCAGCATCCGTCCCTGTTCATCCATGTGGTCAATATCGTAAGAACACTATTGTTGGCATCCTTGAAGCAGAGCATGGGCTAGCACCTCTTTTTCCGATTCATCGACTTGATCGCCTTGTCTCTGGACTTCTCATTTTGGCCAGAAATGCTGCTAAAGCTGATATGTTTCGGCAGCAGATTGAAGGTGGCTTAGTTAAGAAACAATATATAGCAAAAGTAGTTGGGGAATTCCCTGAGGATGAGCTAATTGTTGATGCCAATATAGACTACAATGCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGAGACTCTACAAAGGGGAAGACTGCCTCTACAAAATTTAAAAGGATTAGTTCGAACGGTACTCAAAGTATTGTTTTATGTGAACCAGTCACTGGGCGTACTCATCAGATACGTGTACACTTAAAGCATTTGGGACACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTGTTGATCGATCTAGTAAAGGGTCAAGCGCTGATAGATCAGCTCGCATGTCTGATGCTTCCCTAACATCAAATTTTGATGAAAAAGTGAGCAATGAATGTGAAGAAAATTCAGATTCGGATTTAAGCATTGATCCCATGTGTACAAACTGTCCAAATTTGGCACCCAAAGGATATGATGGTGATGAAGAAGGTCTATGGCTACATTGTTTTAGATACTGTGGACCTGGATGGGAGTATGAATGCCCATATCCTGATTGGGCCAAACTTAGCTAG 1143 0.4191 MKRKREGEAIMDIVWQTPANPLHPQDYIFRNGIRYVKPYYFEFIAHVKNRWAGKTIVDLFADEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYMVKSSQKLSHFVHRHEPPVMACDVPILRKELDVLTVCKPASVPVHPCGQYRKNTIVGILEAEHGLAPLFPIHRLDRLVSGLLILARNAAKADMFRQQIEGGLVKKQYIAKVVGEFPEDELIVDANIDYNAREGRSTAEVRDSTKGKTASTKFKRISSNGTQSIVLCEPVTGRTHQIRVHLKHLGHPIANDMLYISEQTVDRSSKGSSADRSARMSDASLTSNFDEKVSNECEENSDSDLSIDPMCTNCPNLAPKGYDGDEEGLWLHCFRYCGPGWEYECPYPDWAKLS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0829 380 CDD PseudoU_synth_ScRIB2 101 378 - -
Lal17g0829 380 ProSitePatterns Rlu family of pseudouridine synthase signature. 163 177 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0829 380 Gene3D Pseudouridine synthase 117 327 - -
Lal17g0829 380 SUPERFAMILY Pseudouridine synthase 108 377 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0829 380 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 11 379 - -
Lal17g0829 380 PANTHER PSEUDOURIDINE SYNTHASE 11 379 - -
Lal17g0829 380 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 50 296 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal17g0829 380 Pfam RNA pseudouridylate synthase 125 274 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0829 K15454 - gmx:100811500 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0829 17 6156180 6165254 Lal17g0829 17 6156180 6165254 ECH