Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0744 ATGGAGTCGAGTTCGACACAGGAATTCGATTATTTGTTTAAGTTGCTGATGATCGGAGACTCCGGCGTTGGAAAAAGTAGTCTCCTCCTTTGTTTTACATCTGATAGCTTCGAAGATCTCTCTCCAACTATTGGTGTTGATTTTAAGGTGAAATATGTGACTATGGATGGTAAAAAGCTGAAGCTTGCCATCTGGGATACAGCTGGTCAGGAGAGATTCAGAACATTGACAAGCTCTTACTACCGAGGGGCGCAAGGGATCATTATGGTTTACGATGTAACTCGGCGAGAAACATTTACGAATCTCTCGGATGTATGGGCAAAGGAAATAGACCTTTATTCAACAAATCAAGACTGCATTAAGATGCTTGTTGGAAACAAAGTGGATAAGGAGGGTGATAGAGTTGTGACCAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGCCTGTTTATTGAATGCAGTGCTAAAACCCGTGCTAATGTACAACAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAGGGCTCCAAAGGGGTTAAAAAGAACATATTTAAGGACAAGCCATCCCAGTCTGCTGCCACAAGTAGTTGTTGCTGA 624 0.4247 MESSSTQEFDYLFKLLMIGDSGVGKSSLLLCFTSDSFEDLSPTIGVDFKVKYVTMDGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDVWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRANVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDKPSQSAATSSCC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0744 207 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Lal17g0744 207 PRINTS Transforming protein P21 ras signature 13 34 - -
Lal17g0744 207 PRINTS Transforming protein P21 ras signature 35 51 - -
Lal17g0744 207 PRINTS Transforming protein P21 ras signature 53 75 - -
Lal17g0744 207 PRINTS Transforming protein P21 ras signature 117 130 - -
Lal17g0744 207 PRINTS Transforming protein P21 ras signature 152 174 - -
Lal17g0744 207 SMART ras_sub_4 10 177 - -
Lal17g0744 207 ProSiteProfiles small GTPase Ras family profile. 3 207 IPR001806 GO:0003924|GO:0005525
Lal17g0744 207 SMART ran_sub_2 18 203 - -
Lal17g0744 207 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Lal17g0744 207 Gene3D - 5 207 IPR027417 -
Lal17g0744 207 ProSiteProfiles small GTPase Rab1 family profile. 8 207 - -
Lal17g0744 207 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Lal17g0744 207 PANTHER SMALL GTPASE FAMILY RAB PROTEIN 1 207 - -
Lal17g0744 207 CDD Rab18 13 174 - -
Lal17g0744 207 SMART rab_sub_5 13 177 - -
Lal17g0744 207 SMART arf_sub_2 1 178 - -
Lal17g0744 207 PANTHER DRAB5-RELATED 1 207 - -
Lal17g0744 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 180 IPR027417 -
Lal17g0744 207 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0744 Lal-Chr17 5307824 5313156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0744 14 167 EF-hand Containing Proteins AT5G27540 26.250 6.87e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0744 K07910 - gmx:100779729 391.349