Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0743 ATGGAATCAGACAAATCAACCTTCTATTCTCTCTTCCATATTCCATGTTCTCGATTTTCATGGCCACTTCTCTTTCTTCTCTTCACTCTCATCACGTTCCTTTCCCTTCACATACCCACCATCTCCCTTTTCTCCACCTCCATCTTTTTCTTTCAACCCGATCAACCACTAACATGCTCTCACTTTTACCGCCTTGTTCCACGTAGAAAGGTTGTTATGTCCATCGAAGACTTTGGTGGCGTTGGAGATGGCAAAACTTCTAATACGGTGTCGTTTCGGAGAGCGATGAGGTATATGCATGCTTTCCGTGATCGTGGTGGGTCCCAGTTGAATATCCCTAATGGAACATGGCTCACTGGTAGTTTTAATCTAACCAGTGATTTCACCCTTTTTCTTAAACATGGTGCTGTTATTCTTGCATCTCAGGACCCAAAAGAATGGCCTATAATTGAACCGTTGGCATCTTATGGAAGAGGAAGAGAGAGGTTAGGAGGTAGACATATTAGCCTCATTCACGGAAATGGCTTACGCAATGTTGTCATCACAGGAGAAAATGGGACAGTTGATGGTAGAGGAAGAATGTGGTGGGAACTTTGGTGGAACAGAACATTAAAACACACAAGAGGCCACCTTCTTGAGCTTATGAACTCAGATAATGTTCTCATTTCAAACCTCACCTTTCAAAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCTCCAAATACGGACGGCATAGACCCAGACTCTAGTAGGAATGTATGCATTGAAGATAACTACATAGAAAGTGGAGATGATCTTGTAGCTATTAAGAGTGGATGGGATCATTATGGAATCAAAATGGCCCGTCCTAGCTCAAATATAATAGTGAGGAGAGTTTCAGGAACTACCCCAACTTGTTCTGGAGTAGGAATAGGTAGTGAAATGTCCGGAGGAATTTACAACATTACAATTGAGGATTTGCATGTGTGGAACTCCGCCGCCGGAATTCGCATAAAATCGGATAAAGGAAGAGGGGGCTATATAGAAAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTTAAGATACCCATTAGGTTCAGTAAAGGTTCAAATGACCATCCTGATAATGGGTGGGATCCAAAAGCTATTCCTAGATTTAAGAACATTTCTATTAGTAATGTGGTTAGTATAAATTCTACAAAAGCACCAGTTTTGGTTGGTGTAGAGGGTTCATCATTTGAAGGCTTGTGCTTCAAAAATATTACCATGCTTGGTGTAGCATCATCCTCAAAATGGCATTGTGAATATGTGTCTGGTTTTGCCACTGATGTTTTTCCTGTTGCATGTCCTGAGTTGCTGAACAGTGGCAACTCATCATGGTGTTCACCTTCCTGA 1428 0.4139 MESDKSTFYSLFHIPCSRFSWPLLFLLFTLITFLSLHIPTISLFSTSIFFFQPDQPLTCSHFYRLVPRRKVVMSIEDFGGVGDGKTSNTVSFRRAMRYMHAFRDRGGSQLNIPNGTWLTGSFNLTSDFTLFLKHGAVILASQDPKEWPIIEPLASYGRGRERLGGRHISLIHGNGLRNVVITGENGTVDGRGRMWWELWWNRTLKHTRGHLLELMNSDNVLISNLTFQNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSRNVCIEDNYIESGDDLVAIKSGWDHYGIKMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIYNITIEDLHVWNSAAGIRIKSDKGRGGYIENVSISDIRMERVKIPIRFSKGSNDHPDNGWDPKAIPRFKNISISNVVSINSTKAPVLVGVEGSSFEGLCFKNITMLGVASSSKWHCEYVSGFATDVFPVACPELLNSGNSSWCSPS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0743 475 PANTHER PECTIN LYASE-RELATED 14 473 - -
Lal17g0743 475 SUPERFAMILY Pectin lyase-like 65 463 IPR011050 -
Lal17g0743 475 Gene3D - 65 453 IPR012334 -
Lal17g0743 475 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 473 - -
Lal17g0743 475 SMART pbh1 240 266 IPR006626 -
Lal17g0743 475 SMART pbh1 397 419 IPR006626 -
Lal17g0743 475 SMART pbh1 267 299 IPR006626 -
Lal17g0743 475 SMART pbh1 329 350 IPR006626 -
Lal17g0743 475 SMART pbh1 301 323 IPR006626 -
Lal17g0743 475 Pfam Glycosyl hydrolases family 28 169 449 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0743 Lal-Chr17 5294022 5300045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0743 1 473 Glycoside Hydrolase AT4G33440 67.368 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0743 - - gmx:100814190 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0743 17 5294022 5300045 Lal17g0743 17 5294022 5300045 ECH