LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal17g0701	ATGTACGTAATAAAGAGAGATGGTCGACAAGAACCGGTTCACTTCGACAAAATAACCGCGCGCCTTAAGAAGCTTAGTTATGGTTTGAGCACTGATCACTGCGACGCCGTTTTGGTGTCACAAAAAGTATGTGCCGGCGTCTACAAAGGTGTTACCACCAGTCAACTTGATGAACTCGCCGCTGAAACCGCCGCCGGGATGACTGCTAATCATCCTGATTATGCTTCCTTGGCTGCAAGGATTGCTGTTTCTAATCTGCATAAGAACACGATGAAATCATTTTCAGAGACGGTTAAAATTATGTACAACCATTTTAATGAGAGATCTGGGCTGAAGGCTCCTTTGATTGCTGATGATGTATATGAAATCATTATGAAGAATGCGGCTCGTTTGGATAGTGAGATCATCTATGATAGAGATTTTGACTATGATTATTTTGGCTTCAAAACTCTTGAGAGGTCCTATCTCCTGAAGGTTCAAGGGAAGGTCGTGGAAAGGCCTCAGCATATGCTGATGAGAGTTGCTGTTGGAATTCACAAGGATGACATAGAATCTGCTGTCAAAACTTACCACATGATGTCCCAACGATGGTTCACCCATGCGTCACCCACTCTTTTCAATGCAGGAACACCCAGGCCTCAAATGAGTAGTTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGTATATACGAAACTTTGAAGGAGTGCGCTGTCATCAGTAAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCCACAGGCAGTTACATTCGTGGGACAAACGGGACATCCAATGGCATTATTCCAATGCTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAAGGTGGAGGGAAGAGGAAAGGTGCATTTGCTGTGTACTTGGAACCATGGCATGCTGATATATTTGAATTCTTGGATTTACGAAAAAATCATGGAAAGGAAGAGAATCGTGCTCGTGATCTGTTTTATGCTCTTTGGGTACCCGATCTCTTTATGGAAAGAGTTCAGAGTAATGGACAATGGTCTTTGTTTTGCCCCAATGAAGCACCAGGTTTGGCAGATTGTTGGGGTGAGGAATTTGAGAAACTTTACCTTCAGTATGAAAGAGAAGGAAAAGGAAAGAAGGTTGTTAAGGCGCAGAACCTGTGGTTTGAAATTCTGACATCACAGATAGAAACTGGAACCCCTTATATGCTTTTTAAGGACGCTTGCAATAGAAAAAGTAATCAGCAGAATCTGGGCACAATTAAGTCTTCAAACTTGTGTACTGAGATAATTGAGTATTCAAGTCCAACAGAAACTGCTGTCTGTAATCTGGCATCAATAGCACTACCACGATATGTGAGAGAAAAGGGCGTGCCAATGGAGTCTCATCCATCTAAAATTGTTGGGAGCATAGATTCTGGAAATCGGTATTTTGACTTTGATAAACTGGCAGAGGTTACTTCGATAATCACAACTAACCTGAATAAAGTAATTGATGGTAATTACTACCCAGTTGAAAGTGCAAAACTGTCAAATTTACGGCACAGGCCCATTGGTATTGGAGTTCAGGGTCTTGCTGACACCTTCATACTACTTGGCATGGCATTTGATTCACCAGAGGCTCAACAGTTAAACAAGGACATATTTGAGACTATATACTACCACGCTCTAAAAGCTTCTTCCGATATAGCTGAACAAGAAGGCCCTTACGAAACTTATAGTGGTAGTCCTGTAAGCAAGGGAATTCTTCAACCAGACATGTGGGGCGTGACACCCTCAAATCGTTGGGATTGGAATGCACTAAGGGAGATGATATCAAAGAATGGTGTGAGAAATTCACTTCTTGTTGCCCCTATGCCTACTGCATCTACTAGCCAAATTCTTGGTAATAATGAGTGTTTTGAACCATATACTTCAAATATCTACAGTCGCAGAGTTCTAAGTGGTGAATTTGTTGTGGTGAACAAGCATCTTCTTAATGACTTGACTGAGATGGGGCTGTGGTCTCCTGCAATAAAGAATAAGATTGTCTATGAGAATGGTTCAGTTCAAAAAATTCCAGAAATACCTGATGATCTGAAGACTATATACAAAACTGTATGGGAGATCAAGCAAAAGACATTGGTTGATATGTCTGTTGATCGAGGGTGCTACATAGACCAGAGTCAAAGCTTAAATATTCATATGGAACAACCCAACTTTGGAAAGCTGACTTCATTACATTTCTATGCATGGTCAAAGGGTCTAAAGACTGGAATGTATTATCTCCGTTCACAAGCAGCAGCAAATGCTATCCAGTTTACTGTTGATGCTTCTGCTCTCAAAGAAAAACTTAACGCAGAGGTTGTTGATGATGATACAAAGATGGCACAGATGGTGTGCTCTTTAACAAACCCTGAAGACTGTTTGGCTTGTGGCAGTTGA	2430	0.416	MYVIKRDGRQEPVHFDKITARLKKLSYGLSTDHCDAVLVSQKVCAGVYKGVTTSQLDELAAETAAGMTANHPDYASLAARIAVSNLHKNTMKSFSETVKIMYNHFNERSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIESAVKTYHMMSQRWFTHASPTLFNAGTPRPQMSSCFLVCMKDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIRGTNGTSNGIIPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNGQWSLFCPNEAPGLADCWGEEFEKLYLQYEREGKGKKVVKAQNLWFEILTSQIETGTPYMLFKDACNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMESHPSKIVGSIDSGNRYFDFDKLAEVTSIITTNLNKVIDGNYYPVESAKLSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASSDIAEQEGPYETYSGSPVSKGILQPDMWGVTPSNRWDWNALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLNDLTEMGLWSPAIKNKIVYENGSVQKIPEIPDDLKTIYKTVWEIKQKTLVDMSVDRGCYIDQSQSLNIHMEQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAANAIQFTVDASALKEKLNAEVVDDDTKMAQMVCSLTNPEDCLACGS	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal17g0701	809	PANTHER	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	1	809	IPR039718	-
	Lal17g0701	809	TIGRFAM	NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit	145	761	IPR013346	-
	Lal17g0701	809	CDD	RNR_I	167	760	-	-
	Lal17g0701	809	Pfam	Ribonucleotide reductase, all-alpha domain	142	212	IPR013509	GO:0004748\|GO:0005524\|GO:0006260
	Lal17g0701	809	ProSitePatterns	Ribonucleotide reductase large subunit signature.	600	622	IPR000788	GO:0006260
	Lal17g0701	809	Pfam	ATP cone domain	1	89	IPR005144	-
	Lal17g0701	809	SUPERFAMILY	R1 subunit of ribonucleotide reductase, N-terminal domain	6	214	IPR008926	-
	Lal17g0701	809	PRINTS	Ribonucleotide reductase large chain signature	293	312	IPR000788	GO:0006260
	Lal17g0701	809	PRINTS	Ribonucleotide reductase large chain signature	423	434	IPR000788	GO:0006260
	Lal17g0701	809	PRINTS	Ribonucleotide reductase large chain signature	480	503	IPR000788	GO:0006260
	Lal17g0701	809	PRINTS	Ribonucleotide reductase large chain signature	518	540	IPR000788	GO:0006260
	Lal17g0701	809	PRINTS	Ribonucleotide reductase large chain signature	546	569	IPR000788	GO:0006260
	Lal17g0701	809	PRINTS	Ribonucleotide reductase large chain signature	611	638	IPR000788	GO:0006260
	Lal17g0701	809	Pfam	Ribonucleotide reductase, barrel domain	216	757	IPR000788	GO:0006260
	Lal17g0701	809	ProSiteProfiles	ATP-cone domain profile.	1	92	IPR005144	-
	Lal17g0701	809	PANTHER	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE	1	809	-	-
	Lal17g0701	809	SUPERFAMILY	PFL-like glycyl radical enzymes	215	770	-	-
	Lal17g0701	809	Gene3D	-	74	767	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal17g0701	Lal-Chr17	4947710	4952742	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal17g0701	K10807		-	gmx:100791639	1507.66

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal17g0701	17	4947710	4952742	Lal17g0701	17	4947710	4952742	ECH