Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0593 ATGGGTACTATAAGCAATGAAGAACATAGAGAAATTGATAATTTGAAGAGAGAAGACATTGAAGAGTCTCCAATTGAGCCTGAGGATATGAATAGAACAGTACCATGGTTAAGACAAATCACAATCCGTGGAGTAGTTGCTAGCTTCCTCATTGGAGCCATATATAGTGTGATTGTGATGAAGTTGAACCTCACAACTGGACTAGTCCCCAATCTCAATGTCTCAGCTGCTTTACTTGGCTTTGTGTTCATTAGAACTTGGACAAAGCTTCTTTCAAAAGCCAATATTCTTTCAACACCTTTCACTAGACAAGAAAATACCATAATCCAAACATGTGCAGTTGCTTGCTATAGCATCGCCGTAGGAGGCGGTTTTGGGTCTTACCTATTGGGCTTGAATAGGAAGACTTATGAGCTAGCAGGAGTTGATACAAAGGGAAATAGTCCTGGTAGCATCAAGGAACCAGGAATTGGTTGGATGACAGCTTTTCTCTTTGTGACCAGCTTTGTTGGACTATTGGCTTTGGTCCCTATAAGAAAGATCATGATAATAGACTATAAATTAACTTATCCAAGTGGAACTGCTACTGCTGTTCTTATTAATGGATTCCATACTCCTAAAGGAGATGCGTCGGCCAAGAAGCAGGTTCATGGTTTCACGAAATTCTTCTCAGCCAGTTTCCTTTGGGCTTTCTTCCAATGGTTTTATACTGGTGGAGATAGTTGTGGATTTGTTCAGTTCCCTACTTTTGGATTAAAAGCTTGGCAAAACACATTTTACTTTGATTTCAGCATGACTTATGTTGGAGCTGGAATGATTTGTTCCCACCTTGTCAATTTGTCTTTGCTTCTTGGTGCTGTGGTTTCATGGGGTATCATGTGGCCATTAATCAAGGCACAAAAAGGAGAATGGTTCAGTGCAAGTATATCAGAAAGTAGCATGAAGAGTCTTAATGGATATAAGGTTTTTATTTCAATTGCCTTGATCCTTGGTGATGGACTCTACAATTTTCTCAAAATGCTATGTTTCACTGCCAAAAATATCCATGCCAGCATGAAAAAGAAGAATCTTAATGCATTGACAGATAACCAAAAGCCGCAGCCTCTTGACGATCTAAGACGGAATGAAGTATTTGTAAGAGAAAGCATACCTATATGGTTGGCATGTACAGGGTGCATAGTCTTCTCCATCATTTCCATCATTGTAATCCCATTAATGTTCCCTCAGTTGAAGTGGTACTATGTGGTGGTTGCCTATCTTCTTGCACCCTTTCTCGCCTTCTGCAATGCCTATGGTGCAGGCTTAACTGATATGAACATGGCCTATAACTACGGCAAAGTGACTCTCTTTGTGATAGCAGCCTTGGCTGGAAAAAATGATGGTGTGGTTGCTGGCCTTGTAGGGTGTGGCCTCATCAAATCCATTGTTTCAATTTCTTCTGATTTGATGCATGATTTCAAGACTGGTCATCTCACATTCACTTCCCCGCGATCAATGCTTGTAAGCCAAGCTATAGGGACAGCAATAGGTTGTGTTGTTGCTCCTCTCACATTCTTCCTTTTTTACAAGGCCTTTGATGTTGGGAATCCAGATGGTATTTATAAGGCACCATATGCTATCATATATCGAAACATGGCGATTCTCGGTGTTGAAGGCTTTTCAGCCCTTCCCCACCATTGCTTGCAACTTTGTTATGGATTTTTCACATTCGCCGTAGCAGCCAACTTGGTTAGAGACCTTAGTCCTAAAAACATAGGAAGATTTGTTCCACTTCCAATGGCAATGGCTGTACCTTTCTTAGTTGGTGGTAACTTTGCCATTGATATGTGTGTTGGTAGTTTGGTTGTGTATGCTTGGCACAAGCTAAACAGCAAGGAGGCTTGTTTGATGATTCCTGCAGTTGCTTCTGGTTTGATTTGTGGAGATGGGTTGTGGATTCTCCCTTCATCGGTTCTTGCTTTGCTCCGAATTCGTCCCCCGATATGCATGAGCTTCTTCGCAACCAAATAG 2010 0.4134 MGTISNEEHREIDNLKREDIEESPIEPEDMNRTVPWLRQITIRGVVASFLIGAIYSVIVMKLNLTTGLVPNLNVSAALLGFVFIRTWTKLLSKANILSTPFTRQENTIIQTCAVACYSIAVGGGFGSYLLGLNRKTYELAGVDTKGNSPGSIKEPGIGWMTAFLFVTSFVGLLALVPIRKIMIIDYKLTYPSGTATAVLINGFHTPKGDASAKKQVHGFTKFFSASFLWAFFQWFYTGGDSCGFVQFPTFGLKAWQNTFYFDFSMTYVGAGMICSHLVNLSLLLGAVVSWGIMWPLIKAQKGEWFSASISESSMKSLNGYKVFISIALILGDGLYNFLKMLCFTAKNIHASMKKKNLNALTDNQKPQPLDDLRRNEVFVRESIPIWLACTGCIVFSIISIIVIPLMFPQLKWYYVVVAYLLAPFLAFCNAYGAGLTDMNMAYNYGKVTLFVIAALAGKNDGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTFTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGIYKAPYAIIYRNMAILGVEGFSALPHHCLQLCYGFFTFAVAANLVRDLSPKNIGRFVPLPMAMAVPFLVGGNFAIDMCVGSLVVYAWHKLNSKEACLMIPAVASGLICGDGLWILPSSVLALLRIRPPICMSFFATK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0593 669 Coils Coil 667 669 - -
Lal17g0593 669 MobiDBLite consensus disorder prediction 1 24 - -
Lal17g0593 669 Pfam OPT oligopeptide transporter protein 39 652 IPR004813 GO:0035673
Lal17g0593 669 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 6 667 IPR045035 GO:0035673
Lal17g0593 669 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 35 648 IPR004813 GO:0035673
Lal17g0593 669 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL3 6 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0593 Lal-Chr17 4242552 4247246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0593 - - gmx:100795669 1179.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0593 17 4242552 4247246 Lal4g0518 4 3753381 3757506 ECH
Lal17g0593 17 4242552 4247246 Lal17g0593 17 4242552 4247246 ECH