Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0585 ATGTCTGAGGGTTATTGGAGATACGGTGAACCACGCCATCCTCCTTCTTCCGTCGCCGGAAAACGCTCCCGGAACGATTACGATGCCTCTGGCGTTCATGACTTGACTAGTTACTATCCCCATGATCATGATAGAGGAGCAATCCGATCAATTAGAGATACTGAAACTCTTGAAGCATCCTATGAGCGTTACCTCCATAGTGCGCAAGTTTCATCTTATGGTGCTGGACAGTCTACTAGAACCATTGATGGGAGAACTTCCAGTCATTCTGTTGATGATTCACATGTCACAGGTATTGGCGGGGGAGTAGATCCTGGAAAAGACAAGATCCTGGGATTAGGTAGTGGAAGGGCTGACCATTCTCTTCCACATGATGCTACCAATACACTGTTCGTGGAGGGTTTACCTCCCAGCTGTACAAGACGGGAAGTATCTCATATCTTTCGTCCTTTTGTTGGCTACAAAGAAGTCAGACTTGTTAGCAAGGGATCAAGACAACCTGGGGGTGATCCACTGGTACTTTGTTTTGTCGATTTTTTGAGTCCAGCACATGCAGCAACTGCCATGGATGCATTGCAGGGTTATAAATTTGATGAGCTTGACCGCAACTCTGCAAATTTAAGGTTCCAATTTGCTCGCTCTCCTGGTTCAAAGTCAGGTGCCGTTTATCGTGGCAAGTATTGA 684 0.4635 MSEGYWRYGEPRHPPSSVAGKRSRNDYDASGVHDLTSYYPHDHDRGAIRSIRDTETLEASYERYLHSAQVSSYGAGQSTRTIDGRTSSHSVDDSHVTGIGGGVDPGKDKILGLGSGRADHSLPHDATNTLFVEGLPPSCTRREVSHIFRPFVGYKEVRLVSKGSRQPGGDPLVLCFVDFLSPAHAATAMDALQGYKFDELDRNSANLRFQFARSPGSKSGAVYRGKY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0585 227 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 214 IPR000504 GO:0003723
Lal17g0585 227 SMART rrm1_1 129 203 IPR000504 GO:0003723
Lal17g0585 227 MobiDBLite consensus disorder prediction 1 27 - -
Lal17g0585 227 Gene3D - 124 220 IPR012677 -
Lal17g0585 227 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 198 IPR000504 GO:0003723
Lal17g0585 227 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 14 226 - -
Lal17g0585 227 MobiDBLite consensus disorder prediction 75 103 - -
Lal17g0585 227 CDD RRM_RBPMS_like 128 208 - -
Lal17g0585 227 SUPERFAMILY RNA-binding domain, RBD 81 198 IPR035979 GO:0003676
Lal17g0585 227 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 14 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0585 Lal-Chr17 4176836 4183508 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0585 - - gmx:100800440 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0585 17 4176836 4183508 Lal17g0585 17 4176836 4183508 ECH