Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0568 ATGTTTCAACCTCCACCTCCACCCGGTTCCGCCGCCACCACCAACAGCAACCAGCAGTCAGTTCATCCAACACCACTATCCATACAAGGATCCACAGCATTGGTGCCTGTGAATTCAAATGCAAACAATAGTAATGCTCAGGACAGTATGCAAGATGAAGGGTTTGTACAAGCACAGGCCATTGTCCAACATTCCCAGAAACTGCAAGATGATCTACATACGTTAGGGCTGAAAATTAAGCAGCACGAGGACAACCTAAATCGATTGAACACCCAAAGAAGCAAATTGGATGATCTCATTCTTCATTTGCAAGCCACTATTGGGAAATTTGAGTCTTCAAGTACACCCAAACCCAAGATTAGTAGTGGGGACAGCACGCACCCTACGGGTGATGAGGATGTAAATAAACAGATAATGAAGCATGAAAAGTCTGCTGCTGCTATCTTTTGCCAGCTGAAGACTCGTCATGGAACTCAGGCTTCTAATCTTCAATTGACAAAGGATGTTGTGGGCATTGTAGCTACACTGGGCAAAGTTGAGGATGACAATCTTAGCAGGCTTTTGTCAGAATATCTTGGACTGGAGTATATGCTGGCAATTGTTTGTAGAACTTATGAAGGTGTTGAAGCTCTTGAAGTGTATGATAATGAAGGTTTCATAAATAAGTGCTCTGGTCTTCACGGGCTAGGTGCTTCTATTGGAAGGGTTTTGGATGATCGATTTCAAGTGATATGCCTTGAATCTTTGAGGCATGACTGCAAGAGTCTCATGCTTTATCCTGGTAAATATGTGGTTGATGACCCTCAGCGTAAGTTGGACATTTTAAACCCGAGATTACCGAATGGGGAGTCTCCAGCTGGATTTCTTGGCTTTGCTGTCAATATGATCAATGTTGACAGCTCAAACCTATTTTGTGTTACTCCTGGTGGTTATGGCCTCAGAGAAACTCTGTTTTATACTCTCTTTTCTCGTCTGCAAGTATATACGACAAGGGAAGATATGATACAAGCACTACCTTGCATAAGTGATGGAGCTCTTTCTTTAGATGGAGGAATGGTTAGGAGTTGTGGTGTATTTTCCTTGGGGAATAGGGAAGATGTGAATGTGAGATTTCCTAGACCAGAGACATTAAAGGGGCCTGATAACCAAAATGAAATTGTGAGGCAAATGGAGGATGTGAAATTGCAGAAGGAAAAGATTCTCGGGGAATTAAAACGTGAACAAACTTTGCTGGACGTGGCAAGGTTCAATTTCAAAAAATTGAAGAACGACTTTGTTAAGCTCAGACCACTCGATGATGGGATTAAGCCGGGAAGCAAGCTAAGAAGAGAGCCCATGGCATTAGCAATTTGTTTCTGTAGTCAACCTTGTAGCTCATATCAATTTTGTAATCTAGCACTGTTTGAAGGAAAAGTTCTCATTTTTGATTTCTTAAATTGGAGGGGAACCCGCTTCTGTTCACACATGTGA 1470 0.4224 MFQPPPPPGSAATTNSNQQSVHPTPLSIQGSTALVPVNSNANNSNAQDSMQDEGFVQAQAIVQHSQKLQDDLHTLGLKIKQHEDNLNRLNTQRSKLDDLILHLQATIGKFESSSTPKPKISSGDSTHPTGDEDVNKQIMKHEKSAAAIFCQLKTRHGTQASNLQLTKDVVGIVATLGKVEDDNLSRLLSEYLGLEYMLAIVCRTYEGVEALEVYDNEGFINKCSGLHGLGASIGRVLDDRFQVICLESLRHDCKSLMLYPGKYVVDDPQRKLDILNPRLPNGESPAGFLGFAVNMINVDSSNLFCVTPGGYGLRETLFYTLFSRLQVYTTREDMIQALPCISDGALSLDGGMVRSCGVFSLGNREDVNVRFPRPETLKGPDNQNEIVRQMEDVKLQKEKILGELKREQTLLDVARFNFKKLKNDFVKLRPLDDGIKPGSKLRREPMALAICFCSQPCSSYQFCNLALFEGKVLIFDFLNWRGTRFCSHM 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0568 489 Coils Coil 387 407 - -
Lal17g0568 489 MobiDBLite consensus disorder prediction 1 25 - -
Lal17g0568 489 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 49 427 - -
Lal17g0568 489 Coils Coil 65 99 - -
Lal17g0568 489 MobiDBLite consensus disorder prediction 111 128 - -
Lal17g0568 489 PANTHER PROTEIN DEFECTIVE IN MERISTEM SILENCING 3 49 427 - -
Lal17g0568 489 MobiDBLite consensus disorder prediction 111 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0568 Lal-Chr17 4042809 4048874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0568 - - gmx:100809510 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0568 17 4042809 4048874 Lal17g0568 17 4042809 4048874 ECH
Lal17g0568 17 4042809 4048874 Lal4g0495 4 3544229 3550211 LSH