Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0540 ATGTCACAAACCCTTCGTTTAGGTGTTGCTGTAGTTGGCAACATTACCTCAGTATCTCTTTATGCTGCACCAATAACTACCTTTAAAAGGGTTATAAGGAAAAAAAGCACAGAGGAGTTTTCATGCATTCCTTACATCATTGGGCTCTTAAACTGTCTCCTTTTTACTTGGTATGGATTACCTGTTGTAAGCAAGAAGTGGGAGAATTTTCCTCTTGTTACCGTTAATGGAGTTGGAATTGTTCTTGAGTTTTCCTATGTTCTCATTTATTTCTGCTATGCTTCTTCAAAAGGAAAGGCAAAGGTAGCTATGGTAGCAATACCAGTTTTGGTAGTGTTCTGCATTACTGCTATAGTATCAGCTTTTGTATTCCATGATAATGCACACAGAAAGAAACTTGTGGGTAGCATTGGCTTAGTTGTTTCAGTAACAATGTATGGATCTCCTCTTGTTGCAATGAAGAAAGTTATACAAACCAAGAGTGTGGAATTCATGCCACTACCCTTATCTTTGTGTACATTCTTAGCTACTACTCTTTGGTTAATTTATGGAGTCCTCATTCGTGATATATTTGTTGCGGGACCAAGTATAATTGGAATTCCATTGAGCATTCTTCAGCTTATCCTTCATTGCAAATACCGAAAAAGGAATGTTGTGAAAGAACCAAACAAAGAGGACTTAGAGAAGGTGGAGTTAGAAAAGTTGAACTTAGAAATGGAGAATGTGGAAAAGAATGTGACAATTCATAAGAATGGCAACTTGTGA 765 0.3712 MSQTLRLGVAVVGNITSVSLYAAPITTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPVVSKKWENFPLVTVNGVGIVLEFSYVLIYFCYASSKGKAKVAMVAIPVLVVFCITAIVSAFVFHDNAHRKKLVGSIGLVVSVTMYGSPLVAMKKVIQTKSVEFMPLPLSLCTFLATTLWLIYGVLIRDIFVAGPSIIGIPLSILQLILHCKYRKRNVVKEPNKEDLEKVELEKLNLEMENVEKNVTIHKNGNL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0540 254 Pfam Sugar efflux transporter for intercellular exchange 133 216 IPR004316 GO:0016021
Lal17g0540 254 Pfam Sugar efflux transporter for intercellular exchange 10 97 IPR004316 GO:0016021
Lal17g0540 254 Pfam EamA-like transporter family 15 145 IPR000620 GO:0016020|GO:0016021
Lal17g0540 254 Coils Coil 225 252 - -
Lal17g0540 254 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 251 - -
Lal17g0540 254 Gene3D - 10 106 - -
Lal17g0540 254 PANTHER RAG1-ACTIVATING PROTEIN 1 4 251 - -
Lal17g0540 254 Gene3D - 131 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0540 Lal-Chr17 3820472 3822896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0540 1 245 Miscellaneous Gene Families AT5G53190 52.344 1.31e-95 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0540 K15382 - gmx:100813119 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0540 17 3820472 3822896 Lal4g0471 4 3325715 3327718 LSH