Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0537 ATGGTGGAATCAGAGCGAATCCAAATTCCTTGGATGGCTTCGGAACACAGTGCAGTTCCATCCGTTGAAATGAACGGACAAGATTTATCGTTATTTGAAACCCTGGATTCCCAAGGATGCATTTGTTCTCCTCCGCCGCAGCCACCGGAATCTTCCGCTGCTGATGGTTATAAATTGGGATTTGTCGAACGAACTTTCTCTGCCGCCGGCTCCGCCATCCTTTCCGCTATCATTGTCAATCCTCTTGATGTGGCCAAGACAAGGTTGCAGGCGCAGGCTGCAGGGGTTTCTTATTCTCATCCGCTCAGTAATATGACTAGTCGTATGGCTTATTTTGGGCCAACTATGATGTTTGCTGATCTAAGATGTTCTCCATCATGTGCCCGGGCTGCAATTGAAGGCACAGTATCAATTTGTCCTCCCGATTGTTTTCGGTACAAAGGAACACTGGATGTCCTCTACAAAATTATACATCAGGAAGGATTTGCTAGGCTATGGAGAGGCACAAATGCAGGCTTGGCACTTGCAATACCAACTGTAGGAATTTACCTTCCTTGCTATGACGTATTCCGCAACTGGTTGGAGGAATACACATCCAAAAGTGCTCCAAGCACAACTCCATATGTGCCTCTAGTGGCTGGTTCATTGGCACGCTCACTAGCTTGTGCAACTTGTTATCCTATTGAACTTGCCAGAACTCGCATGCAGGCATTTAAAGAGACTCAAATTAATAAAAAGCCTCCTGGAGTGGTACAGACTCTACTAGGAGTCGTCTCACAAGTCAAGAACACAAATAGTCCACAGAACTGCTTACAAGGTTATCGTGCCCTGTGGACTGGCATGGGAGCTCAACTTGCCCGAGATGTACCCTTCTCTGCGATTTGTTGGTCAACCCTCGAACCAACTAGAAGAGAACTTCGTAAACTGGTTGGAGGTGATGATGCCAATGCGTTGGGTGTTCTCGGGGCAAATTTTTCTGCTGGTTTTGTTGCAGGAACTTTAGCAGCCGGAGCTACATGTCCGCTAGATGTTGCAAAAACTCGACGACAAATAGAGAGGGATCCCGTGAAGGCATTGAGAATGACTACAAGACAGACACTGATGGAGATTTGGAGAGATGGAGGCATGAAGGGACTTTTTACCGGTTTTGGTCCACGAGTTGGTAGAGCAGGGCCTTCTGTTGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTACGTTCTAAATCACCAGTACTCAACGTCCTGA 1248 0.4655 MVESERIQIPWMASEHSAVPSVEMNGQDLSLFETLDSQGCICSPPPQPPESSAADGYKLGFVERTFSAAGSAILSAIIVNPLDVAKTRLQAQAAGVSYSHPLSNMTSRMAYFGPTMMFADLRCSPSCARAAIEGTVSICPPDCFRYKGTLDVLYKIIHQEGFARLWRGTNAGLALAIPTVGIYLPCYDVFRNWLEEYTSKSAPSTTPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQINKKPPGVVQTLLGVVSQVKNTNSPQNCLQGYRALWTGMGAQLARDVPFSAICWSTLEPTRRELRKLVGGDDANALGVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIERDPVKALRMTTRQTLMEIWRDGGMKGLFTGFGPRVGRAGPSVGIVVSFYEVVKYVLNHQYSTS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0537 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 205 305 IPR018108 -
Lal17g0537 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 319 407 IPR018108 -
Lal17g0537 415 Gene3D Mitochondrial carrier domain 41 136 IPR023395 -
Lal17g0537 415 Pfam Mitochondrial carrier protein 323 410 IPR018108 -
Lal17g0537 415 Pfam Mitochondrial carrier protein 59 196 IPR018108 -
Lal17g0537 415 Pfam Mitochondrial carrier protein 206 307 IPR018108 -
Lal17g0537 415 SUPERFAMILY Mitochondrial carrier 60 403 IPR023395 -
Lal17g0537 415 PANTHER FI19922P1-RELATED 1 415 IPR045315 GO:1990542
Lal17g0537 415 PANTHER BNACNNG35730D PROTEIN 1 415 - -
Lal17g0537 415 ProSiteProfiles Solute carrier (Solcar) repeat profile. 59 193 IPR018108 -
Lal17g0537 415 Gene3D Mitochondrial carrier domain 137 414 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0537 Lal-Chr17 3778092 3783876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0537 155 405 Organic Solute Cotransporters AT3G55640 26.848 2.67e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0537 K15119 - gmx:100810960 649.047