Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0511 ATGGGTATGGATTTGCATGGCTTAGTGTGCACGCTTCGCTCTGCAAACACCATTCACCAATGCAGACAATTCCACCTCGCCTTTCTCAAAACTGGAATTCTCAACTCCTCCCTCTCAATAAGCAACACACTCCTCCAACTATACACAAAATGTGGCTCTCTCCGAGAAGCACACAACCTGTTCGACGAAATGCCCCAAACAAACACCTTCTCTTGGAACACCCTCATCCAAGCATACCTCAACTCAGGCCACACAGAAAAGTCCCTCCATTTGTTCCACTCCATGCCCTGCAAGAATCACTACTCCTGGAATGTTATCGTTTCTGCTTTCGCCAAAGCTGGACACCTTGAAGTGGCTCATTCTCTGTTCAATGACATGCCCAGTAAGAATGAAAAAGTATGGAATTCTATGATTCATGCCTATTCTCGAAATGGGTATCCAGGAAAAGCATTAAGAATGTTTCGAAATATGAACTTTGACCCTTTGGAAATGGTGTACAGGGATGGGTTTGTGATGGCAACTGTTCTTGGTACTTGTGCTGATTTGTTGGCTTTAAACTGTGGGAAACAAGTTCATGCTCGTGTTTTCGTTGATGGCGTGGAACTTGACAAGGTCTTGTGCAGCTCATTGATTAATTTTTATGGGAAATGTGGTGATTTGGATAGTGCTGCTAAGGTTATGAGTTTGGTGAGTGAAATGGACGACTTCTCTGTATCGGCATTGATATCTGGTTATGCGAATGCTGGAAGAATGAGAGAAGCTAGAAGGGTTTTTGATAGTAGGTTTGGTCCATGCAGTGTGCTGTGGAATTCTATTATTTCGGGTTACGTGTCCAACGGTGAGGAAATGGAAGCACTTGCTCTTTTCAGCAGAATGCGTAGAGGTGGGGTTCTGGTAGATATCTCTACAGTTGCAAACATTTTGAGTGCTTGTAGTACCTTAATCATTACTGAACTAGTTAAGCAAATGCATGCACATGCTTGTAAAGTTGGGGTAACTAATGACATTGTGGTCGCCAGTGCTCTGCTTGATGCCTACAGCAAATGCCATAGCCCTTATGAAGCTTGCACCTTATTTAGCGAGCTCAAAGCTCATGATACCATTTTGCTTAATACTATGATCACTATTTATTCAAATTGTGGAAGAATTGAAGATGCGAAGTTCATTTTTAAGACAATGCCTAGTAAGACCTTAATTTCATGGAATTCAATCTTAGTGGGACTCACTCAGAATGCTTGTCCTGGTGAAGCATTAGATATTTTTTGTCAAATGAATAGGTTGGACTTAAAAATGGATAAGTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGCCAGTAAATCATCACTTGAGCTTGGTGAGCAGGTGTTTGGTAAAGTTATCACCATTGGGCTTGAATCTGATGAGATCATCTCTACCTCCCTAGTTGACTTTTATTTTAAATGTGGTTTTGTTGAGGTAGGGCATAAAGTTTTTTATGGAATGACAAAAACTGATGAAGTCTCATGGAATACAGTGTTGATGGGTTATGCCACTAATGGATATGGAAATGAAGCACTGGCCCTCTTTAATGAAATGAGGAATTCTGGCGTGAGGCCTTCTGCTGTTACATTTACTGGGGTTCTTTCAGCCTGCGATCATTGTGGTCTGGTTGAAGAAGGAAGGAAATTTTTCCATATCATGCAACATACCTTTAATATGAATCCCGGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGGCCGTTCTGGTTGCTTTGAGGAAGCAATGGATCTTATGGAGGCGATGCCTTTTGAGGTTGACGAAAACATGTGGTTGTCAGTTTTGAGAGGCTGCATAGCCCATGGAAATAAGATTCTTGGCAAGATGGCTGCAGAGCAAATTATTCAGCTTGATCCAGAAAATCCTAGTGCTTACATACAATTATCTAACATACTTGCAACTTCTGATGACTGGGAAGGTTCAGCACAAGTAAGAGAGTTGATGAGAGGTAAGAATGTTCAAAAGATTCCTGGCTGCAGCTGGGCAGATTAG 2034 0.4169 MGMDLHGLVCTLRSANTIHQCRQFHLAFLKTGILNSSLSISNTLLQLYTKCGSLREAHNLFDEMPQTNTFSWNTLIQAYLNSGHTEKSLHLFHSMPCKNHYSWNVIVSAFAKAGHLEVAHSLFNDMPSKNEKVWNSMIHAYSRNGYPGKALRMFRNMNFDPLEMVYRDGFVMATVLGTCADLLALNCGKQVHARVFVDGVELDKVLCSSLINFYGKCGDLDSAAKVMSLVSEMDDFSVSALISGYANAGRMREARRVFDSRFGPCSVLWNSIISGYVSNGEEMEALALFSRMRRGGVLVDISTVANILSACSTLIITELVKQMHAHACKVGVTNDIVVASALLDAYSKCHSPYEACTLFSELKAHDTILLNTMITIYSNCGRIEDAKFIFKTMPSKTLISWNSILVGLTQNACPGEALDIFCQMNRLDLKMDKFSFASVISACASKSSLELGEQVFGKVITIGLESDEIISTSLVDFYFKCGFVEVGHKVFYGMTKTDEVSWNTVLMGYATNGYGNEALALFNEMRNSGVRPSAVTFTGVLSACDHCGLVEEGRKFFHIMQHTFNMNPGIEHYSCMVDLFGRSGCFEEAMDLMEAMPFEVDENMWLSVLRGCIAHGNKILGKMAAEQIIQLDPENPSAYIQLSNILATSDDWEGSAQVRELMRGKNVQKIPGCSWAD 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0511 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Lal17g0511 677 Gene3D Tetratricopeptide repeat domain 11 168 IPR011990 GO:0005515
Lal17g0511 677 Pfam E motif 615 675 IPR046848 -
Lal17g0511 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Lal17g0511 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Lal17g0511 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 98 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 573 596 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 70 99 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 101 130 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 237 259 IPR002885 -
Lal17g0511 677 TIGRFAM PPR: pentatricopeptide repeat domain 133 157 IPR002885 -
Lal17g0511 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Lal17g0511 677 Gene3D Tetratricopeptide repeat domain 261 320 IPR011990 GO:0005515
Lal17g0511 677 Gene3D Tetratricopeptide repeat domain 449 542 IPR011990 GO:0005515
Lal17g0511 677 Gene3D Tetratricopeptide repeat domain 169 260 IPR011990 GO:0005515
Lal17g0511 677 Gene3D Tetratricopeptide repeat domain 543 669 IPR011990 GO:0005515
Lal17g0511 677 Gene3D Tetratricopeptide repeat domain 321 448 IPR011990 GO:0005515
Lal17g0511 677 Pfam PPR repeat 371 396 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 206 228 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 572 596 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 70 99 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 399 427 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 340 364 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 133 157 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 237 259 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 101 130 IPR002885 -
Lal17g0511 677 Pfam PPR repeat 42 65 IPR002885 -
Lal17g0511 677 PANTHER OS07G0578800 PROTEIN-RELATED 105 164 IPR045215 GO:0003723|GO:0009451
Lal17g0511 677 PANTHER OS07G0578800 PROTEIN-RELATED 168 677 IPR045215 GO:0003723|GO:0009451
Lal17g0511 677 PANTHER OS07G0578800 PROTEIN-RELATED 11 99 IPR045215 GO:0003723|GO:0009451
Lal17g0511 677 Pfam PPR repeat family 264 311 IPR002885 -
Lal17g0511 677 Pfam PPR repeat family 498 544 IPR002885 -
Lal17g0511 677 PANTHER OS03G0849700 PROTEIN 105 164 - -
Lal17g0511 677 PANTHER OS03G0849700 PROTEIN 11 99 - -
Lal17g0511 677 PANTHER OS03G0849700 PROTEIN 168 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0511 Lal-Chr17 3538826 3540859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0511 42 677 Glycoside Hydrolase AT3G49170 29.179 3.31e-99 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0511 - - pvu:PHAVU_009G132600g 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0511 17 3538826 3540859 Lal17g0511 17 3538826 3540859 ECH