Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0493 ATGGCTTCCCTTCCCGCGCTCTTCTCTCCACCTTTCTTCCCTCTTAAACCTCTTCACACAACCACTTCCACACACTCTCAATCCTTCTTCTTCACTCCACCCCCTTCTTCATTCCCTCCCCTCCAACGACGTCGTTTCACTTTCAAACCCATTTCAGCCTCAGTCAAAGAAAATGTTGGCCTTTTTCGAAAGAGTCTCACTGATTTCACTAGCTTGAACTACTGGGTTGTTCGTGACTATTACCGTCTTGTTAATTCTGTCAATGGGTTTGAGCCGCGGATTCAGGCACTCTCCGATGAGAAGTTAACTAAGAAAACACAAGAGTTTCGCCTTCGTCTCGGGAAAGGGGAGACACTTGCGGATATTCAAGCTGAGGCATTTGCTGTTGTACGTGAAGCTGCTAGAAGAAAACTCGGAATGCGCCATTTTGATGTTCAGATTATTGGGGGAGCAGTGTTGCATGATGGATCCATTGCCGAGATGAAAACAGGCGAGGGAAAGACATTAGTTTCCACATTAGCTGCATACCTTAATGCCCTGACCGGTGAGGGTGTCCATGTTGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGGCGTGTTCATAGCTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGGACTCTGAAGAGAGGAGATTCAACTATAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTACGAGATAATCTTGCTGGAAGTAGCGATCGACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCGATTGTTGATGAAGTGGATTCTGTCCTTATAGATGAAGGAAGGAATCCTTTGTTAATCAGCGGTGAAGCTACTGAAGATGCTGCACGATACCCTGTTGCTGCAAAAGTAGCTGAATTGCTTGTGCAGGGAAGACATTACAAGGTGGAGCTTAAAGATAATTCGGTAGAGTTGTCTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATTAATGCGTTGAAAGCTAAGGAGTTCTATCGCCAAGATGTTCAGTACATTGTAAGAGATGGAAAGGCTTTAATCATCAATGAGCTGACGGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGCATTCATCAGGCTGTGGAGGCAAAGGAAGGTTTGGAGATTCAGGCAGATTCGGTTGTTGTGGCACAGATCACATATCAGTCATTATTCAAGCTTTATCCAAAGTTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGGTGCCAGTCATTGAAGTTCCCACAAATCTTTCTAATATCCGGAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGCTGAATATATGTTTAAACAAGGTCGTCCTATCTTAGTTGGGACGACTAGTGTAGAAAATTCTGAACTTTTGTCTGGTCTGCTTAGGGAATGGGATATTCCTCACAATGTCCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTCAAATTGTTGCACAAGCAGGACGGAAACACGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAGTAGGTGTGCCAATGCTTGCCAGAGAAATTATAGAGGATAGCATACTTTCATTTCTGACACAAGAGGATCCAAATATTGATCTTGCTGGTGAGGCTATTTCAGAAAAGGCGCTTTCAAAAATAAACGTTGGATCATCATCATTGGCCTTGCTGGCAAAGTCAGCCTTAATGGCCAAATATGTTTCCAAAAGTGAGGCTAAAAGTTGGACGTATCAATACGCTAAATCTTTTATCTTGGAGGCCATTGAAATGAGTATGTCACATAGTTTGGAGGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATGTACCCTCTTGGTCCAACTGTTGCACTTGCGTATCTGTCAGTTCTGAAAGACTGTGAAGAACACTGTTTGCATGAAGGGTCTGAGGTAAAAAGACTTGGAGGCCTTCATGTGATTGGAACTTCTTTGCATGAGTCCCGGAGAATAGATAACCAGCTCCGTGGCAGAGCAGGAAGGCAGGGGGATCCAGGATCAACACGATTTATGGATGAGATGTTTCGCAAGTTCAATTTTGATACTGAATGGGCTGTGAGACTTATCTCAAAAATTACAAATGACGAGGATATGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTCCTGGGGTTGCAAATCAATGCAGAAAAGTTCTTCTTCAGTATAAGAAAGAACCTGGTTGAGTTTGATGAAGTTTTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAGTTAATTTTAACAGGAGATGATGAAAGCTGCTCCCAACATATATTCAAGTATATGCAAGCAGTGGTGGACGAGATTGTCTTAAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGAGTTTGAGTAAGCTCTTGAAAGAGTTTATGACAGTTGGTGGAAAGTTGTTGCATGAATCTTTTGAAGGGATTACAGATGACAATTTGCTAAAATCACTTGGGCAGTTGCATGACATAAGTTCTCTTGATATTGTCTACTTTTCTCTTCCCAACTTGCCAGCACCTCCAAATGCCTTTAGGGGAATTCGCAGGAAAAACTCGTCATTAAGACGATGGCTTACTATTTGCTCCGATGATTTAATTGAGAATGGGAAGTATCGGACAACTTCTAATCTCCTTCGCAAGTACCTTGGAGATTATCTCATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAAACATGTAAAGGAAATTGAGAGAGCTGTTCTTTTAAAAACTCTTGATTGTTTCTGGAGAGATCATCTTATAAACATGAATAGACTCAGCTCTGCGGTTAATGTAAGGAGCTTCGGCCATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTCATTTCAATGCTTAGTGCAACTCGAAGGGTAACTGTAGAATCACTGTTGCGGTATTGGACATCACCAATGGAATCTGAAGAACTATATTCATCATAA 3159 0.4213 MASLPALFSPPFFPLKPLHTTTSTHSQSFFFTPPPSSFPPLQRRRFTFKPISASVKENVGLFRKSLTDFTSLNYWVVRDYYRLVNSVNGFEPRIQALSDEKLTKKTQEFRLRLGKGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHSFLGLSVGLIQRGMDSEERRFNYRCDITYTNNSELGFDYLRDNLAGSSDRLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEATEDAARYPVAAKVAELLVQGRHYKVELKDNSVELSEEGIALAEMALETNDLWDENDPWARFVINALKAKEFYRQDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLEIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQVPVIEVPTNLSNIRKDLPIQAFATARGKWEQVRREAEYMFKQGRPILVGTTSVENSELLSGLLREWDIPHNVLNARPKYAAREAQIVAQAGRKHAITISTNMAGRGTDIILGGNPKVGVPMLAREIIEDSILSFLTQEDPNIDLAGEAISEKALSKINVGSSSLALLAKSALMAKYVSKSEAKSWTYQYAKSFILEAIEMSMSHSLEELEKLANEESEMYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMDEMFRKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFSIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFKYMQAVVDEIVLSNIDPLKHPRSWSLSKLLKEFMTVGGKLLHESFEGITDDNLLKSLGQLHDISSLDIVYFSLPNLPAPPNAFRGIRRKNSSLRRWLTICSDDLIENGKYRTTSNLLRKYLGDYLIASYLNVVEESGYDEKHVKEIERAVLLKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRVTVESLLRYWTSPMESEELYSS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0493 1052 Coils Coil 644 664 - -
Lal17g0493 1052 SUPERFAMILY Helical scaffold and wing domains of SecA 937 1049 IPR036266 -
Lal17g0493 1052 Pfam SecA DEAD-like domain 76 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lal17g0493 1052 Gene3D - 291 411 - -
Lal17g0493 1052 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 65 1050 - -
Lal17g0493 1052 CDD DEXDc_SecA 101 457 - -
Lal17g0493 1052 Gene3D - 461 766 IPR027417 -
Lal17g0493 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 458 IPR027417 -
Lal17g0493 1052 TIGRFAM secA: preprotein translocase, SecA subunit 87 859 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 ProSiteProfiles SecA family profile. 62 766 IPR014018 -
Lal17g0493 1052 PRINTS SecA protein signature 122 146 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 PRINTS SecA protein signature 160 174 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 PRINTS SecA protein signature 176 186 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 PRINTS SecA protein signature 229 249 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 PRINTS SecA protein signature 382 404 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 PRINTS SecA protein signature 419 436 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 PRINTS SecA protein signature 456 469 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 Gene3D - 81 458 IPR027417 -
Lal17g0493 1052 Gene3D Helical scaffold and wing domains of SecA 769 883 - -
Lal17g0493 1052 SUPERFAMILY Helical scaffold and wing domains of SecA 770 871 IPR036266 -
Lal17g0493 1052 SMART SecA_DEAD_2 66 445 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lal17g0493 1052 SUPERFAMILY Pre-protein crosslinking domain of SecA 289 410 IPR036670 GO:0016020|GO:0017038
Lal17g0493 1052 SMART SecA_PP_bind_2 290 401 IPR011130 GO:0016020|GO:0017038
Lal17g0493 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 736 IPR027417 -
Lal17g0493 1052 ProSitePatterns SecA family signature. 545 560 IPR020937 GO:0006605|GO:0006886|GO:0016020
Lal17g0493 1052 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 65 1050 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lal17g0493 1052 Gene3D Helical scaffold and wing domains of SecA 901 1042 - -
Lal17g0493 1052 CDD SF2_C_secA 463 735 IPR044722 -
Lal17g0493 1052 Pfam SecA preprotein cross-linking domain 297 401 IPR011130 GO:0016020|GO:0017038
Lal17g0493 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 311 IPR014001 -
Lal17g0493 1052 Pfam SecA Wing and Scaffold domain 764 1039 IPR011116 GO:0016020|GO:0017038
Lal17g0493 1052 Hamap Protein translocase subunit SecA [secA]. 61 1042 IPR000185 GO:0005524|GO:0006605|GO:0006886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0493 Lal-Chr17 3410284 3422774 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0493 K03070 - gmx:100793437 1751.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0493 17 3410284 3422774 Lal17g0493 17 3410284 3422774 ECH