Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0492 ATGACGACGGCGCAACCAACGATGGACTTACCAGAATGCCCCGTTTGCCTCGAAACTTACAACGACACCGTTTCAATCCCTCGCGTACTATCTTGCGGTCACTCAATCTGCGAAGCTTGCCTCGTCTCACTCCCACAGCGATACCCTAACACGATTCGTTGTCCTGCGTGTACACAATTACTAAAATACCCTTCCGATCAAGGTCCTTCTTCTCTTCCCAAAAACATCGACCTCCTTCGAATCTCTCTCCAACACTCTCCTCCTTCTTCAGAATCCGTTCATTCCAAAAAACAAAATCAACGGTCCACGATCAATGGCGTTAAATTCTGGTCTGACGAGTTTTATGCCACGTGGAAGGATTGGATTCTCCCTCACGACGCCGTTTTGGTTGAACCGGAACCCAAACCGGGTGTTTTTGTGCGATTCGGTTCGTTGAATTATTCTACGGTTTGCTTCAGAAGTGATAACAATGGTAACAGTTTGAGCCTTGTTCCTGTTGTTTCTTTACCGTCTATTGTGAATGATTCGAAGTTCAGGTTTAGCTATGTTGCGAGGATTATTAAGTGTTTGGAGAGGATGAAAGAGGTTGAGAGGGAGGGGTTAATTTTGATTCTAGAAGCTTCCGAGAGACGGCGTAGGAGGATGTGTAGGGTTTACGGGTTGTGGAGTGAGGTGGAGGAGGTGGATGATGCGGCTCTATATATTGTGTGTGAGAGGCACAATGGTAGTAATCTTTTCGGTAAGTTCGTTGACTTGAGAAATGGGTTTCTTGATGGTGGGTTTTTTAGTTTTGCGATGATTGGTAAGGGTATCTGTGAATCTGTGCTTGCTTTGCATTTGGAAGGTTTGGTTGCTGGCTGTTTAGGACTTTCTTGTTTTTATTTTGATGAGTTTGGTGGTGTTTGTATTGATTTGAATGAAGCATTGGTGATGGGAAGGAGGGTTTGTTCTAATGTTGTGGATACTGTTTCCGGTGCCACGAGCAGTAAACACAAAGAAAACAAAGCAATATGTAAGGATTGGTTGCAAAGTAAGGTTTTCGTTAGCCCAGAGGTTTTGTTTAGGTTATTGCATAAGGATGATATTACTTGTGAGAATGGGCATTCAAGATATCCAATTGGTTGTGGCTCAGATATATGGTCATTGGCTTGTGTATTACTGCTGCTTCTTGTTGGACATGCATTCCCTCAATATACTTTTCAAATGAATGAAGAGAATGGCTTTGATTACTCAGATGGTTATGCTTGTTGGTTGGAGGAAGTTAATTCAGTTATAGAAGACAAACTAGGGCCTCATTATCTATCGTTGAGGCAGACTCTTTGCAAATGTTTGGACATAAATCCAGGAAACCGTCCAGATGTGGTGGATGTAAGGAAATGCATTCAGGATATGTTAGTCATACCTCAATTTGATTTTCTGGGCAACTTGGAGGTCACAATAAACAAGAACATCATGAATCACTGCTTTATTCTTGGGGAGTTGTTTCAGTTCCACAGGGAAGGTTCTAATGAACAGAGAGAATATGAGTTGCAGGACAATGAAGATGGAGGTCAACCAGATTTCGTTGGAGATGGTGAAGACAATCGTAACGAAGATTTTGTTGCTGGCCTATCTAAGGGAATGACTGAATTTAACGATCTGCGAGGACATCTGGATTGTATCACTGGATTGGCTGTTGGGGGGGGATATTTGTTTAGCTCATCATTCGATAAAACTGTCTGTGTATGGTCCTTACAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGGATAAAGTCATGGCTCTAGTTTGTGTGGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGTGGCATATTTGTCTGGGGAATTACTAGCCCTCTTAGGCAGGTTCCCTTGAGGAAATGGTATGAGCATAAGGATTGGCGATTCAGTGGTATCCATTCCTTGACTGCTTACAGAAACCATTATCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGACGGATCTTTAATTTGCACAATGAATGGCCATAGTTCTGTAGTTTCCAAACTTGCAATATGTGACGAGGTTCTTTACAGTGGTAGTTGGGATGGAACTGTTCGGTTGTGGAGTCTCTATGATCACAGCCCATTGACAGTGCTTGGGGAAGATATGCCCAGAGAGGTGAAGTCTGTCCTGGCAATTACTGTCAATAGGCAGTTGCTTGTTGCTGGTTATGAAAACGGATGCATAAAGGTCTGGAGCAACGACGTGTTCATGAACTCCAAGACATTGCATGATGGTGCTATTTTTGCTATGGATATGCGGGGGAAATGTCTTTATACAGGAGGTTGGGATAAAACTGTTAATATACAGGAATTGTCAGGAGATGATGAGTTTGAACTAGATGTCAAAGCATTTGGTTCCATTCCTTGCAGTTCTGTTGTAACAGCTATATTATGTTGCCAAGGGAAACTTTTTGTTGGATACTCCGATAAGTCTATCAAGTATCATATATGCCTTGCTGCTCTGTTTTGGAGTGGGAGTGCTGGTTGA 2547 0.4248 MTTAQPTMDLPECPVCLETYNDTVSIPRVLSCGHSICEACLVSLPQRYPNTIRCPACTQLLKYPSDQGPSSLPKNIDLLRISLQHSPPSSESVHSKKQNQRSTINGVKFWSDEFYATWKDWILPHDAVLVEPEPKPGVFVRFGSLNYSTVCFRSDNNGNSLSLVPVVSLPSIVNDSKFRFSYVARIIKCLERMKEVEREGLILILEASERRRRRMCRVYGLWSEVEEVDDAALYIVCERHNGSNLFGKFVDLRNGFLDGGFFSFAMIGKGICESVLALHLEGLVAGCLGLSCFYFDEFGGVCIDLNEALVMGRRVCSNVVDTVSGATSSKHKENKAICKDWLQSKVFVSPEVLFRLLHKDDITCENGHSRYPIGCGSDIWSLACVLLLLLVGHAFPQYTFQMNEENGFDYSDGYACWLEEVNSVIEDKLGPHYLSLRQTLCKCLDINPGNRPDVVDVRKCIQDMLVIPQFDFLGNLEVTINKNIMNHCFILGELFQFHREGSNEQREYELQDNEDGGQPDFVGDGEDNRNEDFVAGLSKGMTEFNDLRGHLDCITGLAVGGGYLFSSSFDKTVCVWSLQDFSHLHTFRGHEDKVMALVCVDEEEPLCISGDSGGGIFVWGITSPLRQVPLRKWYEHKDWRFSGIHSLTAYRNHYLYTGSGDRTIKAWSLKDGSLICTMNGHSSVVSKLAICDEVLYSGSWDGTVRLWSLYDHSPLTVLGEDMPREVKSVLAITVNRQLLVAGYENGCIKVWSNDVFMNSKTLHDGAIFAMDMRGKCLYTGGWDKTVNIQELSGDDEFELDVKAFGSIPCSSVVTAILCCQGKLFVGYSDKSIKYHICLAALFWSGSAG 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0492 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 677 IPR001680 GO:0005515
Lal17g0492 848 SMART ring_2 13 57 IPR001841 -
Lal17g0492 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 586 IPR001680 GO:0005515
Lal17g0492 848 ProSiteProfiles Protein kinase domain profile. 136 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0492 848 PANTHER - 9 834 IPR044715 -
Lal17g0492 848 SUPERFAMILY Protein kinase-like (PK-like) 186 465 IPR011009 -
Lal17g0492 848 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 678 709 - -
Lal17g0492 848 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Lal17g0492 848 PRINTS G protein beta WD-40 repeat signature 655 669 IPR020472 -
Lal17g0492 848 PRINTS G protein beta WD-40 repeat signature 695 709 IPR020472 -
Lal17g0492 848 ProSiteProfiles Zinc finger RING-type profile. 13 58 IPR001841 -
Lal17g0492 848 Gene3D Transferase(Phosphotransferase) domain 1 318 466 - -
Lal17g0492 848 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Lal17g0492 848 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 9 834 - -
Lal17g0492 848 SMART WD40_4 671 708 IPR001680 GO:0005515
Lal17g0492 848 SMART WD40_4 753 790 IPR001680 GO:0005515
Lal17g0492 848 SMART WD40_4 540 577 IPR001680 GO:0005515
Lal17g0492 848 SMART WD40_4 626 668 IPR001680 GO:0005515
Lal17g0492 848 SMART WD40_4 711 752 IPR001680 GO:0005515
Lal17g0492 848 SMART WD40_4 580 620 IPR001680 GO:0005515
Lal17g0492 848 Pfam WD domain, G-beta repeat 674 708 IPR001680 GO:0005515
Lal17g0492 848 Pfam WD domain, G-beta repeat 546 577 IPR001680 GO:0005515
Lal17g0492 848 Gene3D - 626 844 IPR015943 GO:0005515
Lal17g0492 848 SUPERFAMILY WD40 repeat-like 542 833 IPR036322 GO:0005515
Lal17g0492 848 Gene3D - 523 624 IPR015943 GO:0005515
Lal17g0492 848 SMART serkin_6 139 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal17g0492 848 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Lal17g0492 848 SUPERFAMILY RING/U-box 11 65 - -
Lal17g0492 848 Pfam RING-type zinc-finger 13 55 IPR027370 -
Lal17g0492 848 CDD RING-HC_TRIM32_C-VII 12 58 - -
Lal17g0492 848 MobiDBLite consensus disorder prediction 505 527 - -
Lal17g0492 848 ProSiteProfiles Trp-Asp (WD) repeats profile. 678 717 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0492 562 780 Acyl Lipid Metabolism Gene Families AT3G18860 27.632 5.96e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0492 - K03070 lja:Lj1g3v0874380.1 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0492 17 3404380 3409383 Lal17g0492 17 3404380 3409383 ECH