Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0482 ATGGCGGTGCATGTGGTGGTGGAGTGGTGGCGGTGGTGTTCTTCCATTGCACTTATTTTAACGGTGGTTTTTGGCACTGTCCATGGTGGCAATGTTACCTACGATGGAAGATCGTTAATCATTAATGGCGAACATAAAATACTCTTCTTTGGTTCAATTCACTATCCTCGTAGCACTCCTGAGATGTGGCGTGATTTAATTGCAAAAGGTAAGGAAGGAGGATTAGATGGCATTGAAACTTATGTGTTTTGGAACCTTCACGAGCCTCAACAAGGCCAGTATGACTTTAGTGGAGGGCGTGATTTAGTTAAGTTCATTAAGGAAATTCAAGCACAAGGTTTATATGTCACCCTTCGAATTGGACCATACATTGAGGCTGAATGGACTTATGGGGGTCTACCAATATGGTTACATGACGTTCCTGGTATTGTTTTTAGATCTGATAATGAGCCATACAAGTTTCACATGCAAAACTTCACTACCAAAATAGTTGATTTGATGAAATCAGCTAAGCTTTTTGCTTCACAAGGAGGGCCTATCATACTATCTCAGATTGAGAATGAATATGGGAATGTTCAAAGATCATTTCATAAGAGTGAAGTGTCCTATGTTAATTGGTGTGCACAAATGGCATTGGGACAAAAAACTGGTGTCCCTTGGGTTATGTGCAAGCAAGATGATGCTCCTGGTGAAGTGATCAACACATGCAATGGTATGCAGTGTGGGAAAACATTTAAGGGACCAAACTCGCCTAACAAACCTTCATTGTGGACAGAGAATTGGACAAGTTTCTACCAAGCCTTTGGTGATAAACCATACTTGAGATCAGCCGAAAACATTGCGTATAACGTCGCCTTATTCGTTGCAAAGAAAGGAAGCTATGTAAATTACTACATGTTCCATGGAGGAACCAATTTCGATAGAGTAGCCTCCGCGTTCATAACAACAGCTTATTATGATGAAGCTCCACTTGATGAATATGGTTTGATTAAGGAACCAAAATGGAGTCATCTTAAGCAACTACATGCTGCAATCAAGTCATGTTCAGACTCTTTACTTTATGGAACTCAAACTGTGGTCAATTTGGGTAACCAACAAATTGCTTATGTTTACAAAAAGAGCTCAACAGGATGTGCCGCGTTCCTCGAAAATACTGATGCTAAGGAAGTAACAATCCAATTTCAAGATGCTCCATATAAGTTACCCTCACAATCAATCAGTATTCTACCAGATTGTAAGACTGTAGCCTTCAACACTGCCAAGGTAAGCGTAAAAGCCAAACACAGAACAATGAAACCACAGTTCAAGTTTGATTCAGCTGAAAAATGGAAAGTGTACAAAGAACCCATCCCCAATTTCGACGATACTTCATCAAAAGAAAATAAACTATTAGATCAAATCACCAAAGCAAAAGATACAAGTGACTATCTATGGTACACTTTCAGGCTTAATGACAACTCCCCTAATGCACAATCTGTTCTTAGAGTAGAAAGCCAAGGACATGTTTTGCATGCATTCGTCAACGGAGTTTTAAACTCAGGAGCGTACCTAGAGCGCAGAGTTGCTGGTTTGACTGCAGTTAAAGTTCAAGGAAAAGATTTCACAAATGAACCATGGGGATATCAGGTGGGGTTGGTTGGAGAAAAGTTGCAAATCTACACAGCTAGTGGATCAAGTAAAGTTCAATGGGAAAGTTTTAAAGACTCTACTACACCACTAACATGGTATCAGACCACATTTGATGCACCAGTTGGCAATGATCCTGTAGCTCTTAACCTTGGTTCTATGGGAAAGGGACAAGCTTGGATTAATGGCCAAGGTATTGGTCGATATTGGGTATCTTTCCACACACCAAAGGGGGATCCTTCACAAATATGGTATCACATACCTAGATCCTACCTAAAACCTACAGGGAATCTACTAGTTCTACAGGAAGAAGAAACTGGGAACCCACTAGCGATCACTGTAGACACAGTCACATATGAATAA 1989 0.4042 MAVHVVVEWWRWCSSIALILTVVFGTVHGGNVTYDGRSLIINGEHKILFFGSIHYPRSTPEMWRDLIAKGKEGGLDGIETYVFWNLHEPQQGQYDFSGGRDLVKFIKEIQAQGLYVTLRIGPYIEAEWTYGGLPIWLHDVPGIVFRSDNEPYKFHMQNFTTKIVDLMKSAKLFASQGGPIILSQIENEYGNVQRSFHKSEVSYVNWCAQMALGQKTGVPWVMCKQDDAPGEVINTCNGMQCGKTFKGPNSPNKPSLWTENWTSFYQAFGDKPYLRSAENIAYNVALFVAKKGSYVNYYMFHGGTNFDRVASAFITTAYYDEAPLDEYGLIKEPKWSHLKQLHAAIKSCSDSLLYGTQTVVNLGNQQIAYVYKKSSTGCAAFLENTDAKEVTIQFQDAPYKLPSQSISILPDCKTVAFNTAKVSVKAKHRTMKPQFKFDSAEKWKVYKEPIPNFDDTSSKENKLLDQITKAKDTSDYLWYTFRLNDNSPNAQSVLRVESQGHVLHAFVNGVLNSGAYLERRVAGLTAVKVQGKDFTNEPWGYQVGLVGEKLQIYTASGSSKVQWESFKDSTTPLTWYQTTFDAPVGNDPVALNLGSMGKGQAWINGQGIGRYWVSFHTPKGDPSQIWYHIPRSYLKPTGNLLVLQEEETGNPLAITVDTVTYE 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0482 662 Pfam Beta-sandwich domain in beta galactosidase 352 422 IPR041392 -
Lal17g0482 662 Gene3D - 531 661 - -
Lal17g0482 662 SUPERFAMILY Galactose-binding domain-like 406 511 IPR008979 -
Lal17g0482 662 SUPERFAMILY (Trans)glycosidases 29 348 IPR017853 -
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 256 271 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 293 308 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 312 328 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 571 585 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PRINTS Glycosyl hydrolase family 35 signature 598 614 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PANTHER BETA-GALACTOSIDASE 509 660 - -
Lal17g0482 662 PANTHER BETA-GALACTOSIDASE 14 511 - -
Lal17g0482 662 PANTHER BETA-GALACTOSIDASE RELATED 509 660 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 PANTHER BETA-GALACTOSIDASE RELATED 14 511 IPR001944 GO:0004553|GO:0005975
Lal17g0482 662 SUPERFAMILY Galactose-binding domain-like 538 659 IPR008979 -
Lal17g0482 662 Gene3D Glycosidases 29 349 - -
Lal17g0482 662 Pfam Glycosyl hydrolases family 35 38 344 IPR031330 -
Lal17g0482 662 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0482 Lal-Chr17 3320732 3329834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0482 7 660 Glycoside Hydrolase AT5G63800 55.524 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0482 - - gmx:100789220 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0482 17 3320732 3329834 Lal17g0482 17 3320732 3329834 ECH