Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0479 ATGAAAATTCACACATCGGCGATTCTTTTTTCATTCACCATTCTCACGACGGTTTCACTAGCGGATCAGTTAACTTCCGCCACCTACCACGGCGCTTTATTCACCAACCACACATGCTACAGCCAACACAAAAAACAGCTCCTATCTCCATCCCTCTTTATCTGCAAAAACAAAACGCAGCGATCGGAGACGGAGTGCGATGTGTGGAGCAAGGCGTGTTCGGAGGTGGTTCTAAGCGTGGCACGGCGGCCGGAGATAGCGGAGTGGTTAAAAAAGGTGAGGAGGAAGATCCATGAGAATCCAGAGCTAGCTTTTGAGGAAATTGAGACGAGTCGGTTGATAAGAAAAGAGTTGGATCTGATGGAAGTTAGTTATCGATATCCGTTGGCGAAGACCGGTATTCGTGCTTGGATCGGAACTGGTGGTCCACCTTTTGTTGCCATTAGAGCTGATATGGATGCACTTCCTATTCAGGAAGCTGTGGAATGGGAGTACAAGTCAAAAGTTGCGGGTAAAATGCACGCTTGTGGGCATGACGCACACGTGACTATGCTTATTGGTGCTGCCAAGATCTTGAAAACTCGAGAGCATTTGTTAAAGGGAACTATTATTCTGCTATTCCAGCCAGCAGAGGAAGCTGGTAATGGTGCAAAGAGAATGATACAAGATGGTGCTCTGGAGGATGTGGAAGCTATATTTGCAGTTCATGTATCCCATCAGTATGCAACTTCTATAGTTGGTTCAAGGCCTGGACCCTTGTTAGCTGGCTGTGGATTCTTCAGAGCAGTGATTACTGGGAAAAAGGGCACTGCTACTAATCCATACCATTCTGTTGATCCAATTTTGGCTGCTTCAGCTGCAGTAATAAGCTTGCAGGGTATTGTTTCCCGTGAATCAAACCCCTTGGATTCACAGGTTGTTTCTGTGACTTCGTTCAATGGCGGCGACAATCTTGACATGACACCAGACATAGTGGTCCTTGGTGGAACTTTCAGAGCTTTCTCTAATACTAGCTTTTACCGTTTACTTGAAAGAATAGAGCAGGTGATTGTGGAACAGGCCAGTGTCTTCAGATGCTCTGCAGAAGTTGACTTCTTTGAAAAGGAATACACCATTTATCCTCCTACAGTCAATGATGACAGGATGTATGAACATGTGAAGAAGGTTTCCATCGATTTGTTGGGCGAAAAGAATTTCATGGTAGTACCACCTATGATGGGTGCTGAAGATTTCTCATTTTACTCCCAGGTGATTCCCTCAGCTTTCTACTACATAGGAATAAGGAATGAAACTCTCGGGTCTATCCATACTGGACACTCTCCATATTTCATGATTGATGAAGATGTTCTACCAATCGGCGCTGCTGTTCATGCTACCATTGCAGAAAGATATCTCATTGAACATGGCTGA 1410 0.4496 MKIHTSAILFSFTILTTVSLADQLTSATYHGALFTNHTCYSQHKKQLLSPSLFICKNKTQRSETECDVWSKACSEVVLSVARRPEIAEWLKKVRRKIHENPELAFEEIETSRLIRKELDLMEVSYRYPLAKTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVTMLIGAAKILKTREHLLKGTIILLFQPAEEAGNGAKRMIQDGALEDVEAIFAVHVSHQYATSIVGSRPGPLLAGCGFFRAVITGKKGTATNPYHSVDPILAASAAVISLQGIVSRESNPLDSQVVSVTSFNGGDNLDMTPDIVVLGGTFRAFSNTSFYRLLERIEQVIVEQASVFRCSAEVDFFEKEYTIYPPTVNDDRMYEHVKKVSIDLLGEKNFMVVPPMMGAEDFSFYSQVIPSAFYYIGIRNETLGSIHTGHSPYFMIDEDVLPIGAAVHATIAERYLIEHG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0479 469 TIGRFAM amidohydrolases: amidohydrolase 92 453 IPR017439 GO:0016787
Lal17g0479 469 Gene3D - 255 374 - -
Lal17g0479 469 PANTHER PEPTIDASE M20 FAMILY MEMBER 14 468 IPR017439 GO:0016787
Lal17g0479 469 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 14 468 - -
Lal17g0479 469 SUPERFAMILY Zn-dependent exopeptidases 84 467 - -
Lal17g0479 469 PIRSF Amidohydrol_AmhX 78 468 IPR017439 GO:0016787
Lal17g0479 469 CDD M20_IAA_Hyd 90 465 IPR044757 GO:0009850|GO:0016787
Lal17g0479 469 Pfam Peptidase family M20/M25/M40 147 462 IPR002933 GO:0016787
Lal17g0479 469 Gene3D Zn peptidases 92 458 - -
Lal17g0479 469 SUPERFAMILY Bacterial exopeptidase dimerisation domain 256 365 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0479 Lal-Chr17 3289750 3296888 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0479 K21604 K14664 gmx:100785666 756.903