Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0469 ATGAATGTTATAGCAACTGGAGCACTTCTCAATCTCCCATTCTCATCCTTCTCTAGATCATCTAAGCTTCGTGTTAAAAAGGGTTTGAAAGGACAATTTAAAGTGTTTGCTGTAATTGGAGAAGAGGATGAGAAGAAGAATGCATGGGGTGCACTCTTTCATGTAGAGGATCCAAGAACTAAAATCCCACTGCATAACAAGGGAAAGTTATTTGATGTAGATCAAGCCTTAGAAGTGGCAAGATATGATCTCCAGTACTTTGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTTCTTCATGAAAAGGTGGTGGAAGTTCTTAATCCTCTAGTTCGTGAGTATAAGTCCATTGGCACTGTGAAAAAGGAGCTAGCGGAGTTGCAGAAAGAATTAGAAGAAGCACACAGACAGGTTAACATATCTGAGGCAAGGGTTTCTACTGCTTTAGATAAATTAGCTTACATGGAAGAGTTGGTAAATGATAATCTGTTGCAAGATCGAACCGTAACTGAAGTTTCTCAGACATCGTCTTCTCCCAGCACTTCTTCCGACTCTGTAGAAATTAAAAAGAGAAGATTGCCGAGGAGAAGGTTGGAAGTATCAGGTCCTGTTCAGCCATACCCTCCCCACTTGAAGAATTTCTGGTATCCTGTAGCTTTCTCTTCTGGCTTGAAGGATGATACAATGATCCCAATAGAATGTTTTGAGGAACCATGGGTTATCTTTAGAGGGAAAGATGGGAAGCCCGGTTGTGTCCAGAATACGTGTGCACACAGAGCATGTCCTCTGCACCTTGGTTCCGTAAATGAGGGTCGTATTCAATGCCCCTACCATGGTTGGGAATTTGCTACTGATGGAAAATGTGAGAAGATGCCATCTGCTCAACTGCGAAATGTGAAGCTAAAGTCGTTGCCGTGTTTTGAAAAGGAAGGCATGATCTGGGTTTGGCCTGGCACTGACCCCCCAACAGTCACACTTCCATCTTTGGAACCTCCTTCTGGATTTAAAATTGTCATGGAGATTCCAATTGAACATGGATTACTTTTGGACAACCTTCTGGATCTTGCGCATGCCCCTTTTACTCACACTTCCACTTTCGCCAAGGGGTGGAGTGTTCCCAGCTTGGTCAAATTCTTAACACCTGCATCTGGCCTACAAGGATACTGGGACCCGTATCCTATTGATATGGAGTTTCGGCCACCGTGCATGGTTATATCAACCATTGGAATTTCAAAGCCGGGTAAACTGGAGGGGAAAAGCACTAAGCAGTGTGCCACACACCTTCACCAACTCCATGTCTGCTTACCATCTTCAAAACAAAAAACAAGACTTCTATACAGAATGTCACTGGATTTTGCTCCTCTACTTACCCATATTCCTTTTATGCAACATCTGTGGAGGCATTTTGCAAAACAGGTTTTAGATGAGGATCTGCGACTTGTCGAAGGGCAGCAAGAGCGAATGAACAATGGTGACAATGTGTGGAATTTCCCAGTACCATATGACAAGCTTGGGGTAAGGTACAGGTTATGGAGAGATGCATTGGAGAGAGAAGCTAAGGAATTACCTTTCAACAGAGAAAACTAA 1593 0.4344 MNVIATGALLNLPFSSFSRSSKLRVKKGLKGQFKVFAVIGEEDEKKNAWGALFHVEDPRTKIPLHNKGKLFDVDQALEVARYDLQYFDWRARQDVLTIMLLHEKVVEVLNPLVREYKSIGTVKKELAELQKELEEAHRQVNISEARVSTALDKLAYMEELVNDNLLQDRTVTEVSQTSSSPSTSSDSVEIKKRRLPRRRLEVSGPVQPYPPHLKNFWYPVAFSSGLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEFATDGKCEKMPSAQLRNVKLKSLPCFEKEGMIWVWPGTDPPTVTLPSLEPPSGFKIVMEIPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVISTIGISKPGKLEGKSTKQCATHLHQLHVCLPSSKQKTRLLYRMSLDFAPLLTHIPFMQHLWRHFAKQVLDEDLRLVEGQQERMNNGDNVWNFPVPYDKLGVRYRLWRDALEREAKELPFNREN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0469 530 Gene3D - 337 525 - -
Lal17g0469 530 Pfam Rieske [2Fe-2S] domain 217 297 IPR017941 GO:0051537
Lal17g0469 530 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 258 280 IPR015881 GO:0005506|GO:0051537
Lal17g0469 530 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 72 527 - -
Lal17g0469 530 MobiDBLite consensus disorder prediction 171 194 - -
Lal17g0469 530 CDD Rieske_RO_Alpha_Cao 202 328 - -
Lal17g0469 530 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 217 317 IPR017941 GO:0051537
Lal17g0469 530 Gene3D - 211 332 IPR036922 GO:0051537
Lal17g0469 530 Coils Coil 119 146 - -
Lal17g0469 530 SUPERFAMILY ISP domain 212 321 IPR036922 GO:0051537
Lal17g0469 530 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 72 527 - -
Lal17g0469 530 SUPERFAMILY Bet v1-like 313 520 - -
Lal17g0469 530 Pfam Pheophorbide a oxygenase 400 495 IPR013626 GO:0010277
Lal17g0469 530 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0469 Lal-Chr17 3228495 3233027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0469 K13600 - gmx:100806298 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0469 17 3228495 3233027 Lal17g0469 17 3228495 3233027 ECH