Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0456 ATGATATCTGTTTATGCTAAGTGTTCCCATTTCAACGATGCACAGAACCTATTCGACGAAATGCCTCATAGAGATATCATTTCGTGGACAACTATGATCTCTGCTTTCACCAATTCTGGGAGGCCCCATCAGGCTCTTGAACTCTATAATCACATGTTGGAATCCAAAACAGAACAACAACCCAATCAGTTCTTGTATTCTACGGTTCTCAAGGCATGTGGTCTTGTGGGAAATGTTGGATTGGGCAAGTTGATTCATGATCATATATGTGAAGCTATGTTAGAGTTTGACACTGTTCTGATGAATGCACTATTGGACATGTATGTTAAATGTGGGAACTTGAGGGATGCCCAACAAGTTTTCAATGAAATGCCGTGTAAAAATTTGACTTCATGGAACACCCTCATTCTGGGGCATGCTAAAGTGGGATTGATAGGTGATGCGCTGAACTTGTTTGATCAAATGTCAAATCCAGATATTGTATCTTGGAACAGCATCATTGCTGGTCTTGCAAATATTAACAGTCCCCATGCACTGCAATTTGTTTCTATGATGCATGTGAAGGGTCTTAAACTAGATGAATTTACATTACCCTGTGCTCTAAAAACCTGCAGTTCTCTTGATGTATTAACCATGGGGATACAGATTCATTGTTATGTTATCAAGTCAGGTTTTGAATCTAGCTGTTATTGTGTATCGTCACTGATTGATATGTATTCAAATTGCAAGCTGCTTGATGAAGCAACTGAGATATTTTATCAATTCTTCAGGAACTCTCCTACCGCTGAAAGCTTGGCGCTTTGGAATTCTATGATTTCAGGGCACATTGCTAATGGAGGGCACGCCGAGGCTCTCAATTTGATTGCAAATATGCATATTTCTGGGGCACGTCTTGATTCCTATACTTTTAGCCTTGCTTTAAAGACCTGCATCTACTTCCATAACTTGCAATTAGCATCTCAAGTGCATGGTTTGGTCGTCACTTGTGGCTATGAGTTAGATTATGTTGTTGGAAGCATCCTTATTGATCTATATGCAAAACAGGGCAATATTACCAATGCGTTGAGATTGTTTGAAAGGTTGCCAGATAAAGATGTTGTAGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAGAACTGGTTTAGATATATTAGCTTTTTCCCTCTTTACAGATATGGTTCATTTGGAACTTGAGATTGACCATTTTGTCCTTTCTACTGTTCTGAAAGTTTCTTCAAATTTGGCATCTCTTCGAAGCGGCAAGCACACTCATTCTTTCTGTCTTAAGAAGGGATATGAATCAGAGAGAGTTATTACAACTGCTCTGATTGATATGTATGCAAAGTGTGGTGAGATTGAGGATGCCTTAGGTTTGTTTCATTGTCTTTCAGAAATAGATATGATGTGTTGGACAGGGATCATTGTGGGATGTGCACAAAATGGAAGAGCATATGAGGCGATTAGTCTTCTGCATAAGATGATTGAAATGGGTACAAAGCCAAATGAAATAACCATTCTAGGTGTACTTACTGCGTGTAGACACACTGGCCTAGTTGAAGAGGCATGGACCATATTTAATTCTATCGAAACTGAGCATGGATTGACGCTATTACCAGAACATTACAATTGTATGGTTGACATACTTTGTCAAGCAGGGCTTTTCAAAGAAGCGATAAAACTGATTAGAAGCATGCCATTTAAGCCTGACAAAAGTATATGGTTCTCCTTAATTGGTGCCTGTGGAACTCACAACAACCGATATCTTGCAAATACTGTTGCTATGCATCTTCTTGCTACCTTTCCAGAAGATGCCTCTGTATATATATTGCTCTCAAATTTTTATGCAACTTTTGGAATGTGGGATAGTCTAAGCAAAGTAAGGGAAGCTATGAAAAAAGTAAGTAAAAAAGAAGCTGGAAAAAGCTGGATAGAGATCTCGAGTTAA 1944 0.3889 MISVYAKCSHFNDAQNLFDEMPHRDIISWTTMISAFTNSGRPHQALELYNHMLESKTEQQPNQFLYSTVLKACGLVGNVGLGKLIHDHICEAMLEFDTVLMNALLDMYVKCGNLRDAQQVFNEMPCKNLTSWNTLILGHAKVGLIGDALNLFDQMSNPDIVSWNSIIAGLANINSPHALQFVSMMHVKGLKLDEFTLPCALKTCSSLDVLTMGIQIHCYVIKSGFESSCYCVSSLIDMYSNCKLLDEATEIFYQFFRNSPTAESLALWNSMISGHIANGGHAEALNLIANMHISGARLDSYTFSLALKTCIYFHNLQLASQVHGLVVTCGYELDYVVGSILIDLYAKQGNITNALRLFERLPDKDVVAWSSLIAGCARTGLDILAFSLFTDMVHLELEIDHFVLSTVLKVSSNLASLRSGKHTHSFCLKKGYESERVITTALIDMYAKCGEIEDALGLFHCLSEIDMMCWTGIIVGCAQNGRAYEAISLLHKMIEMGTKPNEITILGVLTACRHTGLVEEAWTIFNSIETEHGLTLLPEHYNCMVDILCQAGLFKEAIKLIRSMPFKPDKSIWFSLIGACGTHNNRYLANTVAMHLLATFPEDASVYILLSNFYATFGMWDSLSKVREAMKKVSKKEAGKSWIEISS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0456 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Lal17g0456 647 PANTHER BNAC03G28070D PROTEIN 2 77 - -
Lal17g0456 647 PANTHER BNAC03G28070D PROTEIN 42 642 - -
Lal17g0456 647 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 642 - -
Lal17g0456 647 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 77 - -
Lal17g0456 647 Pfam E motif 583 644 IPR046848 -
Lal17g0456 647 TIGRFAM PPR: pentatricopeptide repeat domain 131 156 IPR002885 -
Lal17g0456 647 TIGRFAM PPR: pentatricopeptide repeat domain 469 502 IPR002885 -
Lal17g0456 647 TIGRFAM PPR: pentatricopeptide repeat domain 27 56 IPR002885 -
Lal17g0456 647 TIGRFAM PPR: pentatricopeptide repeat domain 541 564 IPR002885 -
Lal17g0456 647 Gene3D Tetratricopeptide repeat domain 435 647 IPR011990 GO:0005515
Lal17g0456 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Lal17g0456 647 Gene3D Tetratricopeptide repeat domain 79 180 IPR011990 GO:0005515
Lal17g0456 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 131 155 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 100 128 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 469 497 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 367 393 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 268 292 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 540 564 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 339 365 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 232 254 IPR002885 -
Lal17g0456 647 Pfam PPR repeat 440 462 IPR002885 -
Lal17g0456 647 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lal17g0456 647 Gene3D Tetratricopeptide repeat domain 1 78 IPR011990 GO:0005515
Lal17g0456 647 Gene3D Tetratricopeptide repeat domain 212 315 IPR011990 GO:0005515
Lal17g0456 647 Gene3D Tetratricopeptide repeat domain 316 422 IPR011990 GO:0005515
Lal17g0456 647 Pfam PPR repeat family 25 73 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0456 Lal-Chr17 3132581 3134524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0456 1 645 Glycoside Hydrolase AT3G49170 31.402 2.35e-112 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0456 - - gmx:100780678 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0456 17 3132581 3134524 Lal17g0456 17 3132581 3134524 ECH