Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0424 ATGAAGCCCACGGGTTCCACTCTTTACATTGCCACGGAAGAGGGCCCACTCCTCTGTAACTTACTCTATAAGTTCAACTCCTTGGTTCTCAGTCTTCACGTATTTTCACAAAAACCCTCACTTTCTAAAATGGAGGACTTCAACAACGATGACCTTGAGTACGTATTCGATTACTTCGAAGAAGACGAAAATGATTTTTATCCTGACACAAATTCTGATTCTGATTATTCTTCTTCTGACTCCGAGTTCGAAGATGATTTCGAAATGGTATACTTGTTTTGCAATATTAATTTTTTGTTTTTTGGAATTGTTGGAGATGATGATTGGTTCGTTGGAATTGGAATATTGTTGCAGAGTAAGGCGAAGAGTGACACATCAGCTTTGGATGCTAGAAATGGAAAAGATATACAGGGGATTCCATGGGAGAGACTTAATTATAGCAGAGACGAGTACCGTCAGAATCGATTGAAGCAGTACAAGAATTATGAGAACCTCTCTCGCTCTCGTGAGAATCTCGATAAGGAGTGCTTGGGAGTGCAGAAAGAGAATACCTTCTATTATTTCCAGTTCAATACAAGGCTTGTCAAATCCACAATTGTGCATTTTCAGTTGAGGAATTTGTTATGCGCTACATCAAAACATGACCTATACCTTGTGCAAAACTACTCAGTGATGCATTGGTCCTCTTTACTGCGTCAGGGTAAAGAAGTGCTTAATGTGGCCAAACCAATTGTTCCAACCGTTAAGCATCCTGGATTTGTAGTTCAGCCTGTCGCTAGAGTTCAAGTAAGCACCATGACTGTTAGAGAAAATTTGATTGTGGCAGGTGGTTTCCATGGTGAGCTTATTTGCAAGAATTTGAATCACTCTGGAGTTGCATTCTGCAGTAAAATAAGTACAGCTGATAGTGCCATAACCAATGCTGTGGATGTTTACCGTAATCCAACTGGGTCATTGAGGGTCGTCGCTGCAAATAACGATTCCAAATTTCGAGTTTTTGATGCAGAGAGGTTTTATTCTCTTGGTTGTTTCAAATATGATTGGTCGGTTAATAATACTTCTGTTAGTCCAGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATGCTAACACCGGGAAGGTTACCGCGAGCCTAAAAGGGCACTTGGACTATTCTTTCGCGTCAGCTTGGCACCCAGATGGACAAATATTGGCTACTGGGAATCAGGACACAACATGCAGGCTGTGGGACATAAGAAATCTTTCACAGTCCATAGCTGTATTGAAGGGGAGAATGGGTGCAATAAGAGCATTAAGTTTCACATCTGATGGGCGGTTTTTGGCCATGGCTGAACCAGCAGACTTCGTCCATATATTTGATTCAAAGTCTGGTTATGCACAAGGTCAAGAAATAGACCTATTTGGTGAAATTGCTGGTATATCCTTTAGCCCGGACACCGAAGCACTATTTGTTGGTATTGCTGACCGCACCTACGGTAGCTTGTTAGAGTTCACCAGAAGACATCAATACAATTATCTGGACTCCATGTTTTAA 1554 0.4144 MKPTGSTLYIATEEGPLLCNLLYKFNSLVLSLHVFSQKPSLSKMEDFNNDDLEYVFDYFEEDENDFYPDTNSDSDYSSSDSEFEDDFEMVYLFCNINFLFFGIVGDDDWFVGIGILLQSKAKSDTSALDARNGKDIQGIPWERLNYSRDEYRQNRLKQYKNYENLSRSRENLDKECLGVQKENTFYYFQFNTRLVKSTIVHFQLRNLLCATSKHDLYLVQNYSVMHWSSLLRQGKEVLNVAKPIVPTVKHPGFVVQPVARVQVSTMTVRENLIVAGGFHGELICKNLNHSGVAFCSKISTADSAITNAVDVYRNPTGSLRVVAANNDSKFRVFDAERFYSLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADANTGKVTASLKGHLDYSFASAWHPDGQILATGNQDTTCRLWDIRNLSQSIAVLKGRMGAIRALSFTSDGRFLAMAEPADFVHIFDSKSGYAQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFTRRHQYNYLDSMF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0424 517 Pfam WD domain, G-beta repeat 380 417 IPR001680 GO:0005515
Lal17g0424 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 426 IPR001680 GO:0005515
Lal17g0424 517 Coils Coil 162 182 - -
Lal17g0424 517 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 44 517 - -
Lal17g0424 517 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 420 - -
Lal17g0424 517 SUPERFAMILY WD40 repeat-like 257 497 IPR036322 GO:0005515
Lal17g0424 517 SMART WD40_4 334 375 IPR001680 GO:0005515
Lal17g0424 517 SMART WD40_4 421 460 IPR001680 GO:0005515
Lal17g0424 517 SMART WD40_4 378 417 IPR001680 GO:0005515
Lal17g0424 517 ProSitePatterns Trp-Asp (WD) repeats signature. 404 418 IPR019775 -
Lal17g0424 517 PANTHER OS03G0386000 PROTEIN 44 517 - -
Lal17g0424 517 Gene3D - 279 512 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0424 Lal-Chr17 2856991 2861567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0424 301 497 Miscellaneous Gene Families AT5G08390 25.758 2.13e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0424 - - gmx:100775453 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0424 17 2856991 2861567 Lal17g0424 17 2856991 2861567 ECH