Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0393 ATGGGTAGTGGATTCAAGAGAGAAGATGAAAATCCCAATCTCACACAACCCCTCTTGCCAAAAGAAGTGACCATCATTCACACACAACATCAACAACAAGATCAAACTCAGATTGAGTTTGGGAAGAAGTTGTGGATTGAAACGCAGAAGCTATGGTTCATCGTGGGTCCCTCTATTTTCAGCCGAGTCGCATCATTTACCATGAACGTTATTACCCAAGCCTTCGCTGGTCACCTCGGTGATGTTGAACTCGCTTCCATTTCTATTGCCAACACCGTCATCGTCGGCTTCAACTTCGGCCTCCTTTTAGGGATGGCTAGTGCATTGGAGACACTATGCGGGCAAGCGTTTGGGGCAAAGAGATACCATATGTTGGGTATATACATGCAAAGATCATGGATTGTTCTGTTCCTATGTTGTTTCCTGTTGTTGCCGTTTTACATTTTCGCCACCCCACTTCTCAAATTCTTAGGCCATCCCGATGATGTGGCAGAATGGAGTGGGGTGGTGGCAATTTGGCTCATACCCTTGCACTTCAGTTTTGCATTTCAGTTCCCTCTTCAGAGGTTTCTACAGTGCCAGCTAAAGACAGTTGTTATTGCATGGGTTTCTTTGTTGGGTTTGGTGGTTAATATTGCTACCAGCTGGCTTTTCATTTATGTGTGGGATTTTGGGGTTATTGGTGCTGCCATTGCTTTGGATATATCGTGGTGGGTTTTGGTGTTTGGTATGTTTTCTTATGCAGCTTGTGGTGGATGCCCTTTGACTTGGAGTGGCTTTTCCATGGAAGCTTTTTCTGGACTATGGGAATTTCTTAAGCTCTCTGCTGCTTCTGGTGTTATGCTCTGCTTAGAGAACTGGTACTACAGGATACTAGTACTGATGACTGGGAAGTTGGAGGATGCAACTGTTGCCGTTGATGCCTTGTCTGTATGTATGACTATCAACGGCTGGGAAATGATGATTCCTCTTGCTTTCTTTGCGGGTGTGGGGGTGAGGGTGGCGAATGAGCTAGGCGCAGGTAATGCAAAAGGAGCCAAATTTGCAACGTATGTTTCAGTGGTGCAATCATCAGTGATTGGGGTCATCTTCTGCGTGATCATAATGATATTCCATGATCAATTTGCATATATATTCACCTCTAGCCCCGTGGTTCTTCAAGCTGTGGACAAAATGTCTTTCCTCTTAGCTGCTACTATTCTTCTCAATAGTATTCAACCTGTTCTATCAGGGGTGGCTGTTGGCTCAGGATGGCAAGCATTTGTAGCATACCTAAATATTGGGTGTTACTACGTTATTGGGCTTCCACTTGGAATTCTTATGGGATGGTTCTTCAAAACTGGTGTGGGTGGCATATGGGGAGGGATGATATTTGGTGGCACAGCAGTACAAACAGTGTTGCTAATAATAGTAACAGCAAGATGTGATTGGGAAAAGGAGGCAGAAAAAGCTAGCTCCCGTGTGAAGAAATGGTCAACCTCTACCCCCAATGACAAATTGGAAACGGTCTCCTAG 1515 0.4488 MGSGFKREDENPNLTQPLLPKEVTIIHTQHQQQDQTQIEFGKKLWIETQKLWFIVGPSIFSRVASFTMNVITQAFAGHLGDVELASISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLCCFLLLPFYIFATPLLKFLGHPDDVAEWSGVVAIWLIPLHFSFAFQFPLQRFLQCQLKTVVIAWVSLLGLVVNIATSWLFIYVWDFGVIGAAIALDISWWVLVFGMFSYAACGGCPLTWSGFSMEAFSGLWEFLKLSAASGVMLCLENWYYRILVLMTGKLEDATVAVDALSVCMTINGWEMMIPLAFFAGVGVRVANELGAGNAKGAKFATYVSVVQSSVIGVIFCVIIMIFHDQFAYIFTSSPVVLQAVDKMSFLLAATILLNSIQPVLSGVAVGSGWQAFVAYLNIGCYYVIGLPLGILMGWFFKTGVGGIWGGMIFGGTAVQTVLLIIVTARCDWEKEAEKASSRVKKWSTSTPNDKLETVS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0393 504 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Lal17g0393 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 31 488 - -
Lal17g0393 504 MobiDBLite consensus disorder prediction 488 504 - -
Lal17g0393 504 PANTHER PROTEIN DETOXIFICATION 31 488 - -
Lal17g0393 504 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal17g0393 504 Pfam MatE 279 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal17g0393 504 MobiDBLite consensus disorder prediction 483 504 - -
Lal17g0393 504 TIGRFAM matE: MATE efflux family protein 57 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0393 Lal-Chr17 2640390 2647317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0393 K03327 - gmx:100500204 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0393 17 2640390 2647317 Lal17g0393 17 2640390 2647317 ECH