Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0376 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTGGTTTGTGTGGTGGTGCCGGCAGTGATCGGATTTGTGATTCGTCGTAAATGGCAGTTTGCGGTGGCTAGGAAGGAGGAGATCAACAGGCTTCTAATTTTGGCGGCGGAGGAGACCGCCAGGGCCGAGAGAGAGGCGTCGTACTCGTATTTGTATAGCACCGCGGCGGTTTCCACCACCACTAAGATCAATCAATGCGCCGTGTGCTATTTTCCTGCCACTGCGCGCTGCGCTAAGTGCAAATCGGTTCGCTACTGGCCTTTTAGTGTTACTTTTGATCTTGTAATGAGTGAGTTGTATAGTTCTTTTGAGTGCCAAACTGTTCATTGGCGTCAAGGTCACAAATTAGAATGTCGTCCTCCCATCTCAAATGACTGGAATGATGATGTGGTTAGTGATCTTGGTAAGAAGGTAGCAGAGCAAGATTACTCTGATGTTCCCGGAGAGAAATTTGAAACTGAAGGCACACAGAATAAAACATCCTTAGAAAAATCCACATTTCCGGATACAAGTCCTTCTTCTAAAGTTTCATATCAAAAAGAATATTTAAGAGTCGAGCATCTTGCTGAGGAAAATATTACAGATTCTAATTCTGAATTATCTAGTAACTTATTTTCTGGATTCTCAGCTTCCACAAGTGCCACCGAATCATCTGATGATGCCTCTGTCTGTGAGAGTATCATCTCAAATGAGCATGATAGATCAGAGGGGCATATTTCTGTTGATTCCAGCGATGAAATTCCTGAGGCCACTTCAATTGATAATAGTGTGGGTGCAGTCATGTCTTCTTCGCCAAAATTTGCATGTTTGGTTGAGTCATTAGGTGGTTTTCCTATAATGCCTAAATCAAATCAAGTTATGCCTGGTTTTTGTAGAGAGCAGAGTGAGCTTGCTTCAAATGGTACTTTAGGTTCAGGTATGTGGAATGCGACAGTAATTGAGCCTTCTAAAATGTCTACTGGGTTTTGGGATAAAACTCTTGATTCGAGAGTGATTGAAGACAAAATTAATAATTACCCTTGCCCATCTCATTCTGACAAATCCACTGGTGGCAAGAAATCTGATTCTGAAACTTCATTTCGCTTTTCATACAATACCACGCCTCCCTTGCATGTACGCGGTACTGAGACAAAGGGTTCCGTTTCTGATGCTTTTCCAAACTCTTCTGGGAACAATTTGGCCTGTCCTGAATCAACATCATCAGAGAAATACAGCATAGATTCTTCAAAGATGAGGAATTCTCCATTCTTGCACAGCAAAGATTCCAATGTTATGAGCTATAACACTGCCAGTGGTTCTGAATCTGATCAATTGGAATCTAAAGAAATCTCTGGGCCTCCTTTATCTAGTTTCTCTCCTCAGTCCTCCAGTGTTAGCAAAGATTCAGGTTGCGTAGATGGTTTGAGCATCCATAACTTGCAATCAGCCAGCTCTATGGCATCAAACCATGTTGTGGACAAACATGGTAGCACCTTGAAGTCAGCTGAAATTAGATGCCTGACACGTGATCTTGCTAATACTAGTTTAGCTTCTAGGAGTGAAGGACATTCAGTTTCCAGTACAAAAGGTGGGAATAATGGCATTCAATCTTGCAATGTCACCTCATCTCATGTTGCTGTCTGTTCTGAAAATTCCAAGAGTGGCTTGAAAACATCTGTTCTAAAAGTTGTTGATCAACTTAGAGGATCAAATCTATCAAAACATTTTACACTAGCTGCTGGGTGCGATGCTGCTGGAAGATACACTGACAAGGGTCTTTTTCCATATGAATTGTTTGTCAAGCTTTATAACTCGAACAAGGTGGAGTTGCCCCCTTTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTGCTTCAGTGCTTAGCATTTACACCACCCTTGACTGCTTATTTCCTTCAAGGACTGCATTCTAAAGCATGTACAAATAAAAAATGGTGTTTCACCTGTGAGTTTGAAAGCTTGATTTTGAAGTCAAAGGGAACAAAGTCTCCACTCTCTCCTATTGGCATACTATCTCAACTACAAAATATTGGGAGCCAGCTTGGTAATGGCAGGGAAGAAGATGCACATGAATTTCTCAGGCATTCTATTGACACAATGCAATCAGTTTGCCTTATGGAAGCTTGGGCTAACACACCGGGTTCATTGGAAGAGGAAACTACTTTAATGGGTTTTACATTTGGAGGCTACCTTCGATCAAAGATTAAGTGCACGAAATGTGGAGGGAAGTCTGAGCGACAGGAAAGGATGATGGATCTGACTGTTGAGATAGGAGGGGAGATATCAACCTTGGAGGAGGCCCTTCGACGGTTTACAAGTACCGAGACTTTGGATGGAGAAAACAAGTACCACTGTGTTAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCTAATGTTCTTACAATTGCATTGAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCGTTTTCCTGAACTACTTGACTTGGCACCTTTCATGAATGGGACTAGTGATAAATCACCTATATACAGACTGAATGGGGTAGTAGTTCACTTGGATATCATGAATGCTGCCTTTTCGGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTTCAAGATTGATGACAGTGTGGTGATCCCTGTTGAATTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCCCCAAGGGCCCCAAGATTAATCAGGAACATGATAGTATCCCCAGATTCAAGAAGCAAGGCCAATGGAAAGACTCTTACAATGAAACCAAGACATATATCTACAAATTTTAGCGCTGCTGAATATATCAGTAGTTCGATTTCTCCAAATGGTTCACCCACCTTAGACTCTTTCTATTCAAAGTTTCACCACCTGAGAAGGATTTTAGAAGAAGACTCATCAAGTGATAATTCATCACTCCTCAGCAGCAACTCTGATGAAGGTTCTTGTAGTACTGATAGCACCCGTGATTCAACCAGCACAGATGATTTCTCGGATTATATTTTCGGTGATTCAGGGAATGGCTGGAGCAGCACATGGAAGAATTCTGATTCTGAATTTTCATGCACACCATCTTCATCATTGAGCTCTAGGCATTCACCCCTATCTGATATGGACCGGCATGATTCAGTTTCTCCCACTGTGAAAGGGTTGCAAATTCCCACAGTTTCAGGCGGAGGTGTTTCTCTTCTGCAATGA 3300 0.4215 MRVTGDLGFSSLVLVVVVCVVVPAVIGFVIRRKWQFAVARKEEINRLLILAAEETARAEREASYSYLYSTAAVSTTTKINQCAVCYFPATARCAKCKSVRYWPFSVTFDLVMSELYSSFECQTVHWRQGHKLECRPPISNDWNDDVVSDLGKKVAEQDYSDVPGEKFETEGTQNKTSLEKSTFPDTSPSSKVSYQKEYLRVEHLAEENITDSNSELSSNLFSGFSASTSATESSDDASVCESIISNEHDRSEGHISVDSSDEIPEATSIDNSVGAVMSSSPKFACLVESLGGFPIMPKSNQVMPGFCREQSELASNGTLGSGMWNATVIEPSKMSTGFWDKTLDSRVIEDKINNYPCPSHSDKSTGGKKSDSETSFRFSYNTTPPLHVRGTETKGSVSDAFPNSSGNNLACPESTSSEKYSIDSSKMRNSPFLHSKDSNVMSYNTASGSESDQLESKEISGPPLSSFSPQSSSVSKDSGCVDGLSIHNLQSASSMASNHVVDKHGSTLKSAEIRCLTRDLANTSLASRSEGHSVSSTKGGNNGIQSCNVTSSHVAVCSENSKSGLKTSVLKVVDQLRGSNLSKHFTLAAGCDAAGRYTDKGLFPYELFVKLYNSNKVELPPFGLINCGNSCYANAVLQCLAFTPPLTAYFLQGLHSKACTNKKWCFTCEFESLILKSKGTKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRHSIDTMQSVCLMEAWANTPGSLEEETTLMGFTFGGYLRSKIKCTKCGGKSERQERMMDLTVEIGGEISTLEEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTIALKRFQSGKFGKLNKPIRFPELLDLAPFMNGTSDKSPIYRLNGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKIDDSVVIPVELERVLTKGAYMLFYARCSPRAPRLIRNMIVSPDSRSKANGKTLTMKPRHISTNFSAAEYISSSISPNGSPTLDSFYSKFHHLRRILEEDSSSDNSSLLSSNSDEGSCSTDSTRDSTSTDDFSDYIFGDSGNGWSSTWKNSDSEFSCTPSSSLSSRHSPLSDMDRHDSVSPTVKGLQIPTVSGGGVSLLQ 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0376 1099 MobiDBLite consensus disorder prediction 1058 1099 - -
Lal17g0376 1099 SUPERFAMILY Cysteine proteinases 618 930 IPR038765 -
Lal17g0376 1099 Gene3D - 71 136 - -
Lal17g0376 1099 MobiDBLite consensus disorder prediction 1001 1031 - -
Lal17g0376 1099 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 623 638 IPR018200 GO:0004843|GO:0006511
Lal17g0376 1099 MobiDBLite consensus disorder prediction 371 389 - -
Lal17g0376 1099 MobiDBLite consensus disorder prediction 167 191 - -
Lal17g0376 1099 Gene3D Cysteine proteinases 615 935 - -
Lal17g0376 1099 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 622 927 IPR028889 -
Lal17g0376 1099 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 1082 - -
Lal17g0376 1099 MobiDBLite consensus disorder prediction 1082 1099 - -
Lal17g0376 1099 MobiDBLite consensus disorder prediction 1000 1031 - -
Lal17g0376 1099 MobiDBLite consensus disorder prediction 159 191 - -
Lal17g0376 1099 Pfam Ubiquitin carboxyl-terminal hydrolase 622 924 IPR001394 GO:0004843|GO:0016579
Lal17g0376 1099 MobiDBLite consensus disorder prediction 396 479 - -
Lal17g0376 1099 MobiDBLite consensus disorder prediction 352 479 - -
Lal17g0376 1099 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 21 1082 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0376 Lal-Chr17 2510809 2517699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0376 602 931 Miscellaneous Gene Families AT4G31670 51.952 1.02e-119 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0376 K11855 - gmx:100795674 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0376 17 2510809 2517699 Lal17g0376 17 2510809 2517699 ECH