Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0352 ATGAGTACTGGTTGGAGAAGAGCTTTTTGTACTAGGGACCCAGAATCTAATCTAACGGATAATAAACAACAACCCAGTAGTCCAAGTCCTAGAAGCTGTGCCAGATTGAATTTCTTTTCAAGTAGTAGCAACCCAACCACACCACGGTTACATCAATCTCAATCTCCAAGCTTGCGTTGCAGAACAATTTCAGAAGCTGCTATGACAAATGAAAGTCCCAGAGTTCATGGAAAAAGCACACCAAGATCATTAAACTCTCCTAAAACACTTTCTACTTCAAATCCATCTTCTCCTCGCACCCCTTTGAAGCTCTCTCTCTTCAAAAACAGCTTCAAATTCAGGAGTAGCTGTGGAATCTGTTTGAACAGTGTGAAAACGGGGCAAGGAAGAGCGATTTACACTGCTGAATGTTCACATGCTTTTCATTTCCCATGCATCGCTTCGCATGTGCGAAAACATGGTAGCCTTGTATGCCCTGTTTGCAATGCGACATGGAAAGACGTAACGTTACTCGCCGCTCATAAGAATCTTGGCCCTGAATCCGCCACCCAAAACGACGTCGTTGCAACCGAGAAGTCCAATGCTATTGAGAAAAGGAGAATAATGACTCCTTCCTCTGTTTCCAAAACCATAAACAATGAATCAATTCAACAACAACAACAACAAGCAAAGCATGTTTCTGATTCAATCAGATTATATGATGATGATGAGCCTCTGTTATGTCCAATTCCAGAAGCTGATGAAAACGACGACGTTGAGTTTCAGGGTTTTTTTGTCAATCCAAAACCTTCATCATCCTCAGTCAAATCATACTCCGATAACCAAGAAATCAACGACGGAGATTCAAAAACCGTTCAGGTGAAGTTAATGCCAGAGTGTGCAATCGTATCAGTCTCACAATTCCACGAGACATACGCTTTAGTTTTAAAAGTGAAAGCACCTCCATCACCAATTCTCGATCCTTCACAACGTGCTCCGATAGATCTGGTCACGGTTCTCGGAATCGGTGGAACCATGACAGTTGCGAAGATTGAAATGCTGAAACGCGCGATGCGTTTGGTTATCTCATCTCTTGGTTCATCTGATAGGCTCTCAATCGTGGCTTTCTCAGCAATACCAAAACGGTTACTACCATTGATGAGAATGACAGCTCAAGGTCAACGCATGGCTCGTCGCATCGTTGACCGGTTAGTCCCCGTTCCCGGTAACGGAACCACCAGCGTCGGCGACGCGTTAAGAAAAGCCACCAAAGTGTTAGAAGATCGGAGAGAGAGAAACACTGTTACCAGCGTCATGCTTCTATCTGACGGCCAGGATGAAAGATCTCACACTGGTAATAAATCAAATCAACGGAAGAACATAAGCCACGTGTCATCAACCCGGTTCGCTCATATTGAGATTCCGGTTCAATCATTTGGGTTCGGTAGAACCCAAACCGGTCAGGAAGATGTGTTTGCTAAATGCGTGGGTGGGATATTAAGCGTGGTGGTTCAAGACTTGAGGATTCAGCTTGGGTTTCAAGCCGATGCATGTGAAGCTGAGATAAGTGCAATTTACTCGTGTAGTGGGAGACCCACGTTATTTAGTTCAGGAGCTGTGCGGCTCAGCGATTTATACGCCGAGGAGGAACGTGAGCTATTAGTTGAGCTTAGAGTTCCCACGTCGGCTTTTAAAAATGGGACCCACCACGTGATGATGGTTCAATGTCTTTACAAAGACCCTGCGACGCAAGAAATCGTATACGGTAAGGAACAGGGTCTTGTAGTACCTCCTCCTCAAAGTAACCGTTGTAATAGAATCGAGAGGTTGAGGAATTTGTTTATAACGACTCGAGCCATTGCTGAATCTAGGAGGCTTGTGGAGCATAATGGGGACTTAATTAGTGCTCACCATTTGTTGGCTTCGGCTCGAGCTCTATTGGTTCAGTTCGATTCGGATTCAGTCGAGGAGTATGTGAGATGGTTGGAATCTGAGCTTGCGGAAGTTAATTGGAGGAGACAGAATCAAGTAAAAATGGATGAGGTTGAAAGGAGGGATAGGGAGATGGCATTGGTGGATGAGAATGGGGAGCCGCTAACTCCAACATCGGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATGGCTATCATTAAGAAATCCTTGAATAGAGTTAGCGACTTGCATGGATTTGAAAATGCTAGGTTTTAA 2187 0.4472 MSTGWRRAFCTRDPESNLTDNKQQPSSPSPRSCARLNFFSSSSNPTTPRLHQSQSPSLRCRTISEAAMTNESPRVHGKSTPRSLNSPKTLSTSNPSSPRTPLKLSLFKNSFKFRSSCGICLNSVKTGQGRAIYTAECSHAFHFPCIASHVRKHGSLVCPVCNATWKDVTLLAAHKNLGPESATQNDVVATEKSNAIEKRRIMTPSSVSKTINNESIQQQQQQAKHVSDSIRLYDDDEPLLCPIPEADENDDVEFQGFFVNPKPSSSSVKSYSDNQEINDGDSKTVQVKLMPECAIVSVSQFHETYALVLKVKAPPSPILDPSQRAPIDLVTVLGIGGTMTVAKIEMLKRAMRLVISSLGSSDRLSIVAFSAIPKRLLPLMRMTAQGQRMARRIVDRLVPVPGNGTTSVGDALRKATKVLEDRRERNTVTSVMLLSDGQDERSHTGNKSNQRKNISHVSSTRFAHIEIPVQSFGFGRTQTGQEDVFAKCVGGILSVVVQDLRIQLGFQADACEAEISAIYSCSGRPTLFSSGAVRLSDLYAEEERELLVELRVPTSAFKNGTHHVMMVQCLYKDPATQEIVYGKEQGLVVPPPQSNRCNRIERLRNLFITTRAIAESRRLVEHNGDLISAHHLLASARALLVQFDSDSVEEYVRWLESELAEVNWRRQNQVKMDEVERRDREMALVDENGEPLTPTSAWRAAEKLAKMAIIKKSLNRVSDLHGFENARF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0352 728 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 728 - -
Lal17g0352 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 248 IPR013083 -
Lal17g0352 728 ProSiteProfiles VWFA domain profile. 328 475 IPR002035 -
Lal17g0352 728 MobiDBLite consensus disorder prediction 1 101 - -
Lal17g0352 728 MobiDBLite consensus disorder prediction 14 101 - -
Lal17g0352 728 Pfam von Willebrand factor type A domain 328 442 IPR002035 -
Lal17g0352 728 ProSiteProfiles Zinc finger RING-type profile. 117 162 IPR001841 -
Lal17g0352 728 CDD RING-H2 117 162 - -
Lal17g0352 728 Gene3D von Willebrand factor, type A domain 329 501 IPR036465 -
Lal17g0352 728 MobiDBLite consensus disorder prediction 435 455 - -
Lal17g0352 728 Pfam RING-like zinc finger 117 146 IPR001841 -
Lal17g0352 728 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 728 - -
Lal17g0352 728 SMART ring_2 117 161 IPR001841 -
Lal17g0352 728 SMART VWA_4 326 511 IPR002035 -
Lal17g0352 728 SUPERFAMILY vWA-like 324 446 IPR036465 -
Lal17g0352 728 SUPERFAMILY RING/U-box 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0352 Lal-Chr17 2297496 2300472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0352 - - lja:Lj3g3v3131860.1 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0352 17 2297496 2300472 Lal17g0352 17 2297496 2300472 ECH