Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0347 ATGTGTAACCCAAAGCCACTTTGTCCCACAAAAACTCACCTCATAACTCCTTACCCCAAACTCATGAAGCCTCATCATGATGATCAAGTTCAAGATGAACTTCATAGATGGCCAACTCCTAATGAGGTCTTGGAAGAAATCAAAGCCATAGGGAAGATATCAGGACCAACAGCTATAACTGGATTACTCTTATATTCAAGAGCTATGATTTCTATGCTTTTCCTTGGTTACCTTGGTGAAATGGAACTAGCAGGAGGTTCTCTTTCTATTGGTTTTGCTAACATCACTGGCTACTCTGTGATAGCAGGGTTAGCCATGGGAATGGAACCAATTTGTGGACAAGCTTATGGAGCTAAACAAATGAAGATTCTTGGTTTGACCCTTCAAAGAACAGTACTACTCCTTCTTTCAATTTCTATTCCTATCTCATTCACATGGCTTAACATGAAGAGAATCCTCTTGTGGTGTGGCCAAGACCATGAAATATCATCCATAGCACAAACTTTCATTCTATTTACCATACCTGACCTTTTCTTCCTCTCACTTCTTCACCCTCTTAGAATCTATTTAAGGACCCAAGGCATTACATTACCACTAACATATTGTTCAGCTATATCTATTCTCTTTCATGTCCCTTTGAATTTCCTCCTAGTGGTTCATTTCAACATGGGTATAACAGGGGTAGCATTGGCAATGGTTTGGACTAATCTTAACCTCTTTCTCTTCCTTTCATTCTTTATCTACTTCTCAGGTGTATATAAAGATTCTTGGGTATCACCAAGCATGGATTGCCTTAGAGGTTGGTCTTCATTGCTTGCACTTGCTATCCCAACTTGTGTTTCAGTTTGCCTTGAATGGTGGTGGTATGAACTCATGATACTATTGTGTGGACTCCTTGTGAATCCAAAAACCACCATTGCTTCTATGGGAATACTCATTCAAACAACTTCATTAGTCTATGTTTTCCCATCCTCTCTCAGCCTTGGTGTTTCAACGAGAGTTGGGAATGAGTTAGGTGCAAAAAGACCTATAAAAGCCAGGGTTTCAATGATAGTATCACTCTTTTGTGCTGTTGGTTTAGGCATAGGAGCTTTGATTTTCACCACCTTGATGAGGCACCAATGGGGAAAGTTCTTCACCAATGATCAACAAATCCTTGACCTTACTTCAATAGCATTGCCAATTATTGGCTTGTGTGAGCTTGGAAACTGTCCTCAAACCACAGGTTGTGGAGTCCTTAGAGGTAGTGCAAGACCAACTATTGGAGCAAACATCAATTTGGGTTCTTTTTACTTGGTGGGTATGCCTGTGGCTATTCTTCTTGGGTTTGTGGCTAAAATGGGATTTTCTGGGCTCTGGCTTGGGTTGCTTGCAGCCCAAGCCTCATGTGCAGCTCTCATGCTATTTGTTCTCTTCACTACTGACTGGAATGCCCAAGTTGAAAGAGCAAAAGAGCTTACAAAAACATCATCAAATGCTGCTACTTCTACAACATTACCAACATTCACAACAGTTGAGTTGAACAAGAATGATCATGATGCTGCTACTCTTCAAGAGATAGTTATCACAAATGATGAGGTTGCTAAGACACACTCACTTGAAACAGATCCACTCATCATAACAACTTCTACCAAACACAATGTAAATTAG 1650 0.4036 MCNPKPLCPTKTHLITPYPKLMKPHHDDQVQDELHRWPTPNEVLEEIKAIGKISGPTAITGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVIAGLAMGMEPICGQAYGAKQMKILGLTLQRTVLLLLSISIPISFTWLNMKRILLWCGQDHEISSIAQTFILFTIPDLFFLSLLHPLRIYLRTQGITLPLTYCSAISILFHVPLNFLLVVHFNMGITGVALAMVWTNLNLFLFLSFFIYFSGVYKDSWVSPSMDCLRGWSSLLALAIPTCVSVCLEWWWYELMILLCGLLVNPKTTIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGAKRPIKARVSMIVSLFCAVGLGIGALIFTTLMRHQWGKFFTNDQQILDLTSIALPIIGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILLGFVAKMGFSGLWLGLLAAQASCAALMLFVLFTTDWNAQVERAKELTKTSSNAATSTTLPTFTTVELNKNDHDAATLQEIVITNDEVAKTHSLETDPLIITTSTKHNVN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0347 549 Pfam MatE 56 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal17g0347 549 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lal17g0347 549 PANTHER PROTEIN DETOXIFICATION 26 500 - -
Lal17g0347 549 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910|GO:1990961
Lal17g0347 549 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 500 - -
Lal17g0347 549 TIGRFAM matE: MATE efflux family protein 62 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0347 Lal-Chr17 2245551 2247756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0347 K03327 - gmx:100788339 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0347 17 2245551 2247756 Lal17g0347 17 2245551 2247756 ECH