Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0342 ATGAACACTGACCAGTTTCAGAGGAACAACATGTACATAGAAACCCCTGAAGCTTATGGTGATGGTGGCAAAAACTTTGATGACGATGGACGAGAGAAAAGAACAGGGACATGGGTGACAGCGAGTGCTCATATAATAACGGCAGTGATAGGGTCAGGAGTGCTATCTCTTGCATGGGCAATAGCACAAATGGGATGGGTGGCTGGTCCTGCAGTGCTATTTGCATTCTCATTTATAACATATTTCACATCTACTCTTCTAGCTGACTCTTATAGGTCACCTGATCCTGTTACTGGCAAGAGAAACTATACCTATTCCCAGGTTGTAAGGTCTACCCTAGGAGGGAGGAAATTTCAGCTTTGTGGGTTGGCTCAGTATATAAATCTTGTAGGTGTAACCATCGGCTACACCATAACAGCTTCAATTAGCATGGTGGCGGTGAAAAGGTCAAATTGTTTTCACAAACATGGCCATGAAGACAAGTGTTATACATCAAATAACCCTTTCATGATCCTCTTTGCCTGCATCCAAATTGTACTTAGCCAGATACCAAATTTTCATAAGCTTTCATGGCTATCCATTGTTGCAGCTGTTATGTCTTTTGCTTATTCTTCCATTGGCCTTGGCCTCTCCATAGCTAAATTAGCAACAGGTGGAGAACATGTACGGACATCATTAACAGGGGTTCAAGTTGGAGTGGATGTTACAGGATCAGAGAAGGTTTGGAGGACATTTCAAGCTATTGGTGACATAGCTTTCGCTTATGCTTATTCTAATGTGCTCATCGAGATACAGGCATGCCCTCATATTATGCTATTTACTGATACACTGAAATCAAGCCCTGCTGAGAACAAAGTCATGAAGCGAGCAAGCTTGATTGGTATCTTAACCACAACTTTATTTTATGTGCTATGCGGGACCTTAGGCTATGCAGCATTTGGAAATGATGCACCAGGAAATTTCCTCACAGGATTTGGCTTCTATGAGCCATTTTGGTTAATAGACTTCGCCAATGTTTGCATAGCTGTTCACTTAGTTGGGGCATACCAGGTCTTTTGCCAACCCATATTTGGGTTCGTAGAGAGTTGGGGTAAAGAAAAATGGCCTGAGAGCAAATTTGTAAACGTAGACCATGTTGTGAAGCTTCCATTGTGTGGAACTTACAACATGAACTTTTTCAGGATGGTGTGGAGAACCATATATGTTATTATTACTGCAGTAATAGCTATGTTGTTTCCATTCTTCAATGACTTCCTTGGCCTGATTGGGTCACTTTCCTTCTGGCCATTAACGGTTTACTTCCCCATTGAGATGTATATTAAGCAGTCCAAGATGCAAAAATTCTCTTTCACGTGGACATGGCTCAAGATATTAAGTTGGGTCTGCTTGATTGTTTCTATTATCTCAGCTGCTGGCTCCATCCAAGGCCTTGCTCATGATCTCAAGAAATATCAACCCTTCAAAGCTACCCAATAA 1476 0.418 MNTDQFQRNNMYIETPEAYGDGGKNFDDDGREKRTGTWVTASAHIITAVIGSGVLSLAWAIAQMGWVAGPAVLFAFSFITYFTSTLLADSYRSPDPVTGKRNYTYSQVVRSTLGGRKFQLCGLAQYINLVGVTIGYTITASISMVAVKRSNCFHKHGHEDKCYTSNNPFMILFACIQIVLSQIPNFHKLSWLSIVAAVMSFAYSSIGLGLSIAKLATGGEHVRTSLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQACPHIMLFTDTLKSSPAENKVMKRASLIGILTTTLFYVLCGTLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLVGAYQVFCQPIFGFVESWGKEKWPESKFVNVDHVVKLPLCGTYNMNFFRMVWRTIYVIITAVIAMLFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQKFSFTWTWLKILSWVCLIVSIISAAGSIQGLAHDLKKYQPFKATQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0342 491 Pfam Transmembrane amino acid transporter protein 34 476 IPR013057 -
Lal17g0342 491 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 13 484 - -
Lal17g0342 491 PANTHER OS05G0424000 PROTEIN-RELATED 13 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0342 Lal-Chr17 2192983 2196967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0342 7 489 Organic Solute Cotransporters AT5G49630 74.949 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0342 K24917 - gmx:100806335 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0342 17 2192983 2196967 Lal17g0342 17 2192983 2196967 ECH
Lal17g0342 17 2192983 2196967 Lal21g0434 21 3006182 3013438 LSH