Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0329 ATGGGTGTTGGGGTTCTATCATCGTCTTATTACCCACGATTTTCCCCTTCAATGTGGTGTGGTAGTTTGAGATACTTGAAATCCCCTTGCATTCGGTGTTGTACTACCCTATCTGTTCCTACCTCTTCAAATACACAATCACAGACTCCTTCTCCCTCTGTAAGGAAAAGGGTAGTTTCGGGAGTTCAGCCCACGGGCTCAATTCACCTCGGTAACTATTTTGGAGCCATCAAGAATTGGGTTGCACTTCAGAATACATACGATACACTTTTCTTCATTGTGGACTTGCATGCGATCACATTGCCTTATGACGTGCAACAATTGTCTAAGGCTACAAAGTCAACTGCAGCCATTTATCTTGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTCTTTGTACAGTCTCATGTTCGAGCACATGTTGAACTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTCCTGATGGCTTCTGATATACTTCTGTATCAGTCTGATCTTGTTCCTGTTGGTGAAGATCAAAAACAGCATTTAGAGTTGACCCGTGACTTAGCTGAACGGGTTAATAATTTATACGGAGGAAGAAAGTGGAAGAAATTAGGCGGGTTTGATGCCTTTTTATTTTGTACATTTTTTACAGCCGAGGTGGTTCCAGAGCCACTTATACCTCCAGCTGGAGCCCGAATCATGTCCCTAACTGATGGCCTTTCCAAGATGTCAAAGTCTGCACCGTCTGATCAATCTAGGATCAATATTCTTGATTCTAAAGAACTTATATCAAACAAGATCAAGAGATGCAAGACTGATTCATTTCCTGGCATGGAATTTGATAATTCTGAGAGGCCTGAATGTAACAATCTTCTATCCATATACCAACTCATTTCAGGGAAGACAAAAGAGGAAATTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAAGCTCTTTTGACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCTGATTCAGGTTATTTAGATGAAGTTTTGGCAGATGGTGCTAAAACTGCAACAGAAATAGCAGATGCTACACTTCATAATGTTTACCAAGCAATGGGATTTTGCAGGAGACAGTGA 1215 0.4181 MGVGVLSSSYYPRFSPSMWCGSLRYLKSPCIRCCTTLSVPTSSNTQSQTPSPSVRKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLFFIVDLHAITLPYDVQQLSKATKSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGFDAFLFCTFFTAEVVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDSKELISNKIKRCKTDSFPGMEFDNSERPECNNLLSIYQLISGKTKEEIVQECQNMNWGTFKALLTDALIDHLHPIQVRYEEIMSDSGYLDEVLADGAKTATEIADATLHNVYQAMGFCRRQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0329 404 Pfam tRNA synthetases class I (W and Y) 57 355 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal17g0329 404 Gene3D HUPs 58 399 IPR014729 -
Lal17g0329 404 TIGRFAM trpS: tryptophan--tRNA ligase 55 400 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lal17g0329 404 Hamap Tryptophan--tRNA ligase [trpS]. 55 401 IPR024109 GO:0004830
Lal17g0329 404 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 64 73 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lal17g0329 404 PANTHER BNAA04G15180D PROTEIN 47 400 - -
Lal17g0329 404 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 47 400 - -
Lal17g0329 404 Gene3D - 260 370 - -
Lal17g0329 404 PRINTS Tryptophanyl-tRNA synthetase signature 68 84 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lal17g0329 404 PRINTS Tryptophanyl-tRNA synthetase signature 118 137 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lal17g0329 404 PRINTS Tryptophanyl-tRNA synthetase signature 195 216 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lal17g0329 404 PRINTS Tryptophanyl-tRNA synthetase signature 267 277 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lal17g0329 404 CDD TrpRS_core 57 352 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lal17g0329 404 SUPERFAMILY Nucleotidylyl transferase 56 400 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0329 K01867 - gmx:100780447 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0329 17 2083781 2093826 Lal17g0329 17 2083781 2093826 ECH