Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0290 ATGTGTTACCCTTTTCTCATTGGTCTCTTGAAGAAGTGTTCAAAAATCCGTTTGCTTAATCAGGGAAAGCAAGTACACGGGGTTGTGGAAAAACTAGGGTTTCGGTGTGATTTAGTTTTGAACAATGATCTTATTGATATGTATGCAAAATGTGGCACCTTGAACTTGGCTTGTTTGGTGTTTGATAAAATGCCTGAAAGAAATGTGGTGTCTTGGACAGCTCTGATGTGTGGTCATCTACAGAATGGTGATGCCAAAGCCTCTTTAGTGCTGTTCTCTAAAATGGGTCATTCAGCTGTTAAGCCGAATGAATTCACACTCTCTACTAGTCTGAAATCATCAGGGATTTTGGGCATTCTTGAGAGCGGAATGCAGATTCATGGAGTTTGTGCAAAATCTAATTTTGAGAGAGTACTCGTTGTGGGCAATTCAATCATTGACATGTACTCCAAGTGTGGTAGGATAAGCGAGGCAGCTCGAATGTTTAATGCTATGCCTGTAAGAAATCTTATTAGTTGGAATTCAATGATTGCTGCATACAGCCATGAAAGAAATGGTGAAGAGGCTTTAACACTGTTTAGGCAAATGCAAGAGAAGGGGGAAGTTCCTGATGATTATACATATTCAAGCACGTTAAAGGCATGTAGCTGTCTTAGTGCAATAGGAGAAGGAACCCAAATCCATGCTTCCTTACTCCGACAAGGATTTCCATACTTGGCTCTATCAACCATTGCAGGCGCGCTGGTTGATCTGTATGCCAAATGCAGTCGCATAGGTGAAGCGAGGAAAGTGTTCGATCGAATTGAACAAAAGAATGTGATATCTTGGACAACACTAATTCGTGGTTATGCTGAAGAAGACAATTTGCCAGAAGCCATGGAATTGTTTCAGCAACTGAGAGAAAGCAGACATAAAGTGGATGGGTTTGTACTCTCTAGTCTCATAGGCGTCTTTGCTGATTTTGCCCTTGTACAGCAGGGGAAGCAAATGCATGCTTATACCATCAAAGTCCCCTACGGTTTGGATATATCAGTGGCTAATTCAATTTTGGATATGTACATGAAATGTGGATTAACAGATCAGGCAGATGCACTTTTCAGAGAGATGATAGCGAGAAATGTGGTTTCATGGACGGTTATGATAACCGGTTATGGAAAACATGGTGTTGGGAATAAGGCGGTTGAACTTTTCAATGAAATGAAATTGGATCAAATAGAACCTGACAGCGTGACTTACTTGGCTGTGCTAACAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTCAACAATACTTGTCTAGTTTACGTAACAACCAGCAGATCAAACCGCAAGTAGAGCATTATTCGTGCATAGTTGATCTTCTTGGACGAGCTGGACGCATAAAGGAAGCAAAGGATCTCATTGAGAAAATGCCCTTGAAGCCAAATGTTGGTATATGGCAGACATTGCTTAGTGCTTGCAGAAAGCATGGAGATGTAGAGATGGGAAAAGAAGTGGGAGAAATGCTTTTGAGATTGGATGGTAATAATCCAGTAAACTATGTCATGTTGTCAAACATATATGCAGATGCAGGACACTGGAAAGAGAGTGAGCAAATAAGAGAATCTGTGAAGAGAAAGGGATTGAAGAAAGAAGCAGGGCGTAGTTGGGTAGAGGTAGACAAGGAAATCCATATTTTCTACAATGGAGATAGCAATCACCCACTTATAGGGAAAATTCACCTAGTGTTGAAAGATGTGGAGAAGAGAATGAAGGAAGAAATAGGCTATGTTCATAATGTCCATTTTGCATTGCATGATGTTGAAGAAGAGTCAAAGGTGGAGAGCTTGAGGTTTCATAGTGAGAAATTGGCAATTGGGTTGGTTTTGATTCATGGTGGGGTGAAAAGAGAAAGGGTGGTTCAGATTTTCAAGAACTTGAGGGTTTGTGTTGATTGCCATACATTCATAAAGGGTTTGTCAAAGCTTTTGAAGATTGTATTTTTGGTTAGAGATGCAAATAGATTTCACAGATTTGAGAATGGTTTGTGTTCGTGTGGAGATTACTGGTGA 2052 0.4059 MCYPFLIGLLKKCSKIRLLNQGKQVHGVVEKLGFRCDLVLNNDLIDMYAKCGTLNLACLVFDKMPERNVVSWTALMCGHLQNGDAKASLVLFSKMGHSAVKPNEFTLSTSLKSSGILGILESGMQIHGVCAKSNFERVLVVGNSIIDMYSKCGRISEAARMFNAMPVRNLISWNSMIAAYSHERNGEEALTLFRQMQEKGEVPDDYTYSSTLKACSCLSAIGEGTQIHASLLRQGFPYLALSTIAGALVDLYAKCSRIGEARKVFDRIEQKNVISWTTLIRGYAEEDNLPEAMELFQQLRESRHKVDGFVLSSLIGVFADFALVQQGKQMHAYTIKVPYGLDISVANSILDMYMKCGLTDQADALFREMIARNVVSWTVMITGYGKHGVGNKAVELFNEMKLDQIEPDSVTYLAVLTACSHSGLIKEGQQYLSSLRNNQQIKPQVEHYSCIVDLLGRAGRIKEAKDLIEKMPLKPNVGIWQTLLSACRKHGDVEMGKEVGEMLLRLDGNNPVNYVMLSNIYADAGHWKESEQIRESVKRKGLKKEAGRSWVEVDKEIHIFYNGDSNHPLIGKIHLVLKDVEKRMKEEIGYVHNVHFALHDVEEESKVESLRFHSEKLAIGLVLIHGGVKRERVVQIFKNLRVCVDCHTFIKGLSKLLKIVFLVRDANRFHRFENGLCSCGDYW 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0290 683 Gene3D Tetratricopeptide repeat domain 4 116 IPR011990 GO:0005515
Lal17g0290 683 Gene3D Tetratricopeptide repeat domain 119 220 IPR011990 GO:0005515
Lal17g0290 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lal17g0290 683 PANTHER - 7 641 - -
Lal17g0290 683 Pfam PPR repeat family 67 112 IPR002885 -
Lal17g0290 683 Pfam PPR repeat family 169 215 IPR002885 -
Lal17g0290 683 Pfam PPR repeat family 372 420 IPR002885 -
Lal17g0290 683 Gene3D Tetratricopeptide repeat domain 347 565 IPR011990 GO:0005515
Lal17g0290 683 Gene3D Tetratricopeptide repeat domain 221 337 IPR011990 GO:0005515
Lal17g0290 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Lal17g0290 683 SUPERFAMILY TPR-like 252 533 IPR011990 GO:0005515
Lal17g0290 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Lal17g0290 683 TIGRFAM PPR: pentatricopeptide repeat domain 347 375 IPR002885 -
Lal17g0290 683 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Lal17g0290 683 TIGRFAM PPR: pentatricopeptide repeat domain 448 471 IPR002885 -
Lal17g0290 683 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Lal17g0290 683 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Lal17g0290 683 TIGRFAM PPR: pentatricopeptide repeat domain 143 168 IPR002885 -
Lal17g0290 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lal17g0290 683 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 7 641 - -
Lal17g0290 683 Pfam PPR repeat 447 472 IPR002885 -
Lal17g0290 683 Pfam PPR repeat 247 273 IPR002885 -
Lal17g0290 683 Pfam PPR repeat 274 302 IPR002885 -
Lal17g0290 683 Pfam DYW family of nucleic acid deaminases 589 683 IPR032867 GO:0008270
Lal17g0290 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 372 IPR002885 -
Lal17g0290 683 Pfam E motif 490 552 IPR046848 -
Lal17g0290 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0290 Lal-Chr17 1803502 1805553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0290 2 683 Glycoside Hydrolase AT3G49170 36.547 7.57e-156 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0290 - - gmx:100806657 1103.97