Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0288 ATGGGTATAACAGAAGCATGCTCCAGATTGATAGGGGACTTGTTCCAAGCATTCAAACATTCACCACCATGCTCAATACCTCACCTTGATCACAATCATGATCCTACATGCAACCCTCAAAATGTGCTCAAACTTGATGAAAAGATGGTCACTGCTCTTGTCACTGTCTTTGGCATGCAAAACAATGGAAGAATCAAGAAGGAAAATGCTAGGAAAGTGGTGGAGAAGCTAGGTTTGATGTATGGTTCTAAGGAGGACAAGCCCTCAAGATTTGAGCTAGTTGTTGAGGGTGCCTTGCAGGATGATGAAGTGCCTGTAGAAGATGTTCTTGGTGAGTTGGAAGAGGACATGTCGAAGCGAAGCGAATTGTTACAAGAAGCTTTCAAAATATTTGATGAGGATGGTGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGACAAAGGTTGGGATATAAATACAATTGAAAAGATGGTGAAGGTTGTAGACTTGAACTTTGATGGCAAAGTTGATTTTAGTGAGTTTGAATTGATGATGGGATAG 564 0.4131 MGITEACSRLIGDLFQAFKHSPPCSIPHLDHNHDPTCNPQNVLKLDEKMVTALVTVFGMQNNGRIKKENARKVVEKLGLMYGSKEDKPSRFELVVEGALQDDEVPVEDVLGELEEDMSKRSELLQEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDINTIEKMVKVVDLNFDGKVDFSEFELMMG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0288 187 Pfam EF-hand domain pair 123 186 IPR002048 GO:0005509
Lal17g0288 187 PANTHER CALCIUM BINDING PROTEIN 108 186 - -
Lal17g0288 187 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Lal17g0288 187 Gene3D - 28 187 - -
Lal17g0288 187 SUPERFAMILY EF-hand 50 186 IPR011992 -
Lal17g0288 187 ProSiteProfiles EF-hand calcium-binding domain profile. 157 187 IPR002048 GO:0005509
Lal17g0288 187 SMART efh_1 123 151 IPR002048 GO:0005509
Lal17g0288 187 SMART efh_1 161 187 IPR002048 GO:0005509
Lal17g0288 187 CDD EFh 124 182 IPR002048 GO:0005509
Lal17g0288 187 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Lal17g0288 187 PANTHER CALCIUM BINDING 108 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0288 Lal-Chr17 1791411 1791974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0288 111 186 EF-hand Containing Proteins AT4G20780 53.165 1.26e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0288 - - adu:107470962 270.781