Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0282 ATGGATATCAACTTTGATCTGAACGCTCCTCATTCCATGGGAACAACCATCATCGGCGTTACTTACGACGGTGGTGTCGTACTTGGAGCTGACTCTAGAACCAGCACCGGTGTATATGTTGCTAACCGTGCATCTGATAAAATCACTCAGCTCACTGATAATGTCTATGTCTGCCGCTCTGGATCGGCTGCAGATTCTCAGGTTGTTTCTGATTATGTGCGCTACTTCCTCCATCAACACACGATACAGCTTGGACAACCTGCAACTGTCAAAGTTGCTGCGAACCTTGTCCGCCTTCTCGCATATAACAACAAGAATTCCTTACAGACTGGGCTAATTATTGGTGGTTGGGACAAACATGAAGGTGGTCAAATTTATGGAGTCCCTCTGGGTGGAACCATAGTACAGCAACCTTTTGCCATTGGAGGGTCTGGCTCCAGTTACTTGTATGGATTTTTTGACCAAGCCTGGAAAGAAGGAATGACCAAGGATGAAGCTGAGGATTTAGTGAAAAAGGCAGTTTCACTGGCCATTGCTCGTGATGGTGCAAGTGGTGGTGTGGTCCGAACAGTCATAATAAACTCAGAGGGAGTGACTAGGAATTTCTACCCTGGTGATCAACTTCCGTTATGGCATGAGGAACTGGAGCCTCAAAACTCATTGCTAGACATTCTTGGTGGTGCCCCTGAGCCAATGAACATCTAA 705 0.4652 MDINFDLNAPHSMGTTIIGVTYDGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNSLQTGLIIGGWDKHEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEELEPQNSLLDILGGAPEPMNI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0282 234 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Lal17g0282 234 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Lal17g0282 234 CDD proteasome_beta_type_6 15 202 - -
Lal17g0282 234 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Lal17g0282 234 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 10 216 IPR029055 -
Lal17g0282 234 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lal17g0282 234 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lal17g0282 234 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lal17g0282 234 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Lal17g0282 234 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 7 226 - -
Lal17g0282 234 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 218 IPR029055 -
Lal17g0282 234 PANTHER PROTEASOME SUBUNIT BETA 7 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0282 Lal-Chr17 1750668 1753925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0282 K02738 - gmx:100793551 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0282 17 1750668 1753925 Lal17g0282 17 1750668 1753925 ECH
Lal17g0282 17 1750668 1753925 Lal21g0390 21 2652426 2655859 LSH