Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0262 ATGCCTCTGGGAGAAAGAGAAGGTGATAAAACTGAATCTCGCTATTGCGGTGTTGAAACGGAGTTTAACGATGACATGCCTCATGTTCTCGCTTTCAATCTCTCTTCTGCTGGTTTTGATTTCGTTATTGCTCCTTTGTTGGATCCTGCTTATCGACCAAGCTTAGTTCAAAAGGATATTTTTGGATCCACCATTCTTCCATTTGCTGGGTCAGATTTGGTTTTGAGCCCTTCCCAATGGAGTAGTCATGTAGTGGGAAAAATCAGCCCATGGTTAGATTTGGATTCAGAAGATGAAATCCTTAGGCTTGATTCTGAAACCACTCTCAAACAAGAAATATCTTGGGCTTCTCATCTCTCATTACAGGCTTGCCTACTCCCAGCTCCCAAGGGAACTACCTGTTCTAATTATGCTAGGTGTGTGAATCAAATCTTACAGGGCCTAAGTAATATGCAGTTGTGGCTTAGGATTCCAGTGGTGAAACCTGATGATGACTCCATGGATGCAAATTCTGATACTTCGGTTGACACTTGGGAAATGTGGAATTCATTTCGTCTGCTATGTGAGCATCATAGTCAACTCTCTGTTGCACTTGATATATTGAATACTCTACCTGCAGAAAATTCACTAGCACGTTGGTTTGGGGAGTCTGTTAGAGCAGCTATAATAAATACTGATTCCTTTTTAACAAATGCACGTGGTTACCCATGCCTATCGAAGCGTCACCAGAAGTTAATTACTGGCTGTTTTAATCACTCCATACAGATCATAATATCGGGAAATTCTGTCCATCCAAAAACAAAGGTGGTTGCAGATGTTTCTCGTAATCATTCTGGTCCTGATTCACAAAGACACCCCTTGCGGCCATATCTGGACTATGTTGGATACCTATACCAAAAAATGGACCCTCTTCCTGAGCAAGAACGTTTTGAGCTTGGCTACAGGGATTTTTTGCAGGCACCATTGCAACCTCTGATGGATAATTTAGAGGCTCAAACCTATGAAACTTTTGAGAAAGACGCTATGAAATACATCCAGTACGAAAGAGCAGTATGTAAAGCATTGCTGGACAGGGTTCCTGATGAAGAGGCATCTGTGAAAGTATTGATGGTTGTCGGTGCAGGACGAGGGCCTCTTGTGCGGGCATCATTACAGGCTGCTGAAGAAACTGGACGGAAGCTAAAAGTTTATGCTGTCGAAAAGAACCCAAATGCAGTTGTTACTCTTCATGCATTGGTTAAGTTAGAGGGTTGGGAGGATATTGTTACCATAGTCTCTAGTGACATGCGTTGCTGGAATGCCCCCGAAGAAGCAGACATATTGGTTAGTGAATTGCTAGGTTCTTTTGGTGACAATGAACTTTCTCCCGAGTGTCTTGATGGAGCTGAGCAGTTTCTAAAGCAAGATGGAATTTCGATCCCATCATCGTGTGTAACTTCCTTTCACTGCATGTGTTACTTGTTTACCTCTGTTAGTAGGTACACAAGTTTCCTTCAACCAGTTACTGCTTCAAAGTTATATAATGACGTAAAGGCACATAAGGACCTTGCACACTTTGAAACTGCTTATGTTGTGAAAATACACAATGCAGCTCGACTTGCACCTTCTCAGCCAGTTTTCACCTTTACTCATCCGAAACCCGATAAAGAAAGCAACCAGCGGTACAAAAAGTTGCACTTTGTGATGCCTAATGACACTGGTTCTGCAATGGTACATGGATTTGCTGGCTACTTTGATGCAACTCTTTACAAGGATGTGCATCTTGGAATTGAACCTTCAACAGCAACACCAAACATGTTTGCAATATTTTTCCCACTAAGATCCCCTATTTGTGTGGGTCCTGGTTCTACCCTTGAAGTAAATTTCTGGCGCTGTTGTGGTCCTAAAAAGGTTTGGTATGAGTGGTGTGTTACTTCTCCTTCTTCATCTCCAATTCACAACAGTAATGGACGCTCATACTGGGTTGGACTTTAG 1974 0.4235 MPLGEREGDKTESRYCGVETEFNDDMPHVLAFNLSSAGFDFVIAPLLDPAYRPSLVQKDIFGSTILPFAGSDLVLSPSQWSSHVVGKISPWLDLDSEDEILRLDSETTLKQEISWASHLSLQACLLPAPKGTTCSNYARCVNQILQGLSNMQLWLRIPVVKPDDDSMDANSDTSVDTWEMWNSFRLLCEHHSQLSVALDILNTLPAENSLARWFGESVRAAIINTDSFLTNARGYPCLSKRHQKLITGCFNHSIQIIISGNSVHPKTKVVADVSRNHSGPDSQRHPLRPYLDYVGYLYQKMDPLPEQERFELGYRDFLQAPLQPLMDNLEAQTYETFEKDAMKYIQYERAVCKALLDRVPDEEASVKVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHALVKLEGWEDIVTIVSSDMRCWNAPEEADILVSELLGSFGDNELSPECLDGAEQFLKQDGISIPSSCVTSFHCMCYLFTSVSRYTSFLQPVTASKLYNDVKAHKDLAHFETAYVVKIHNAARLAPSQPVFTFTHPKPDKESNQRYKKLHFVMPNDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFAIFFPLRSPICVGPGSTLEVNFWRCCGPKKVWYEWCVTSPSSSPIHNSNGRSYWVGL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0262 657 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 318 635 IPR025799 GO:0016274|GO:0018216
Lal17g0262 657 Gene3D Vaccinia Virus protein VP39 310 475 IPR029063 -
Lal17g0262 657 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 657 - -
Lal17g0262 657 Pfam PRMT5 TIM barrel domain 38 300 IPR035247 -
Lal17g0262 657 Gene3D - 493 656 - -
Lal17g0262 657 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 333 656 IPR029063 -
Lal17g0262 657 Pfam PRMT5 arginine-N-methyltransferase 306 473 IPR035075 -
Lal17g0262 657 Pfam PRMT5 oligomerisation domain 494 655 IPR035248 -
Lal17g0262 657 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 1 657 IPR025799 GO:0016274|GO:0018216
Lal17g0262 657 PIRSF PRMT5 3 657 IPR007857 GO:0006479|GO:0008168|GO:0035246
Lal17g0262 657 Gene3D - 14 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0262 Lal-Chr17 1631303 1641293 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0262 K02516 - gmx:100782245 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0262 17 1631303 1641293 Lal4g0246 4 1588292 1599724 LSH