Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0180 ATGCTGGATGATGACATTTACGATTTGCCTCTTACCCAAACAGCAACTTCTCTCTCCAAGAAACCCAAACACAATAATTCCTTCGAAATTGACAAGGAGAATATTCCCTCTAACCCTAATTCACCATTCCCAAACTATTCCACTATCGACAGCGACGATTATGCACCACATGAATTTGAAAACTGCAGCTTGGATTTCATTCCTTCCACCATAGACATGGACTGTACCACATTTCAACATCATCGTGTTTCTTCTTCCCATTCTTCCCATTCTTATTGTTCTGCGCCTCGTGAATTGAAGGGGGGCTATTTTGGAAACTCAATAGAGTCTAAGTTGGTTTTATTGAGAAACGAATCTGAAAAACTCTCAGATGAAGTTGCGGAGCTTGATTCGGATTCGGAGCTTGATCCGTTATTGAAATTGTGTAATGAGTTAGAGCAATTAGATGGAGATTGTGTGAGATATCCTCTATGTGAGGTTGATATTTCAAATTTAACGGAGGAACAGCGAAATCTTCACACCAATGTTTGTCTTCACAAATCACAAGATACACCTCAACATGTTTCACCACATGTTGAAGAGGTAGATGCTCAATCTGTACCAAAAGTTTCCCCTGTTGTTGATTGGCTGCGTAATCTGGGTTTAGTAAAATATGAACATGTTTTTGTGAGGGAAGAAGTTGATTTTGACATCTTGCAGTGGCTAACGGAAGAGGATCTCTTAAGCATGGGTGTTACTGCACTTGGCCCCAGAAAAAAGATCGTGCATGCCCTGTCTGAACTTAGAAAAGGAGCTGCCCCTAAAAATGAGGAACATGAGGATGCTCCTGCAGAGCCTAGAAGGATTAGAAACCAGAAAGCCAAAGTGCAACATGACAAATCTGAAAGAAAATTTGGTAGCACTAGCAAACCAGTGGCAAACAAATTAATTACTGAGTATTTTCCGGGTTTTGCTATCAATGGGAAGAAAGTTTCTGCCATTCCCGGAGAACAGCCTGAAATAAAAAACAGCTGCTCAGGTTCTGGTCATAAGCACAAAGTAAAAAATACGCCAACAAATAGAAAGCTTCGCGATGTTCCCAAATGGTGTATCATACCAGGAACACCATTCCGGGTGGATGCTTTCAAATATCTGAGAGGAGATTGTTCTCACTGGTTTCTCACACACTTCCATTTGGACCATTATCAAGGTCTCACCAAGTCGTTCAATCATGGAAAGATCTATTGCTCCTCCGTCACAGCTAGGCTCGTAAATATGAACATTGGGATTCCGTATGATAAATTGCATGTTTTGCCCCTGAATGAAAAGGTTAAAATATCCGATGTTGATGTGACTTGCTTGGATGCCAATCATTGCCCTGGTTCCATTATCATACTCTTTCAACCTCCAAACGGTAAGGCGGTGCTCCACACTGGGGATTTTCGCTTTAGTGAAGAAATAGCCCTCAATCCTTTGCTGCACACGTGTCCTATACATACCCTAATTGTTGATTCAACATACTGTAACCCACAGTATGACTTTCCAAAACAAGATGCTGTAATACAATTTGTTATTGATGCCATTCAAGCTGAGTCTTTTAATCCCAAGACCCTTTTTCTGATTGGCAGCTATACAATTGGTAGAGTTCAATACAACTCTTTCCCTTTCTCGATATTTATGCTACGAAAAGAAAGGCTATTCCTAGAGGTTGCTCGTGCGCTTCATAAAAAGGTTTATGTGACAGCAGCAAAGATGCGTGTTTTAGAATGTTTGGAATTTCAGGATGAGGATATGCAGTGGTTTACTTCAAATGAACACGAAAGCAACATTCATGTTGCCCCTATGTGGACACTCGCAAGCTTCAAAAGATTGAAGCATGTATCATGTCAATATGCGAGTCGGTTCAGTCTCATAGTTGCTTTCTCTCCCACTGGTTGGACATTCGGCAAAGGTAAAAAGAAGCCTGGGAGAAGGTGGCAGCAGGGTACTATTATAAGGTATGAAGTGCCATACAGTGAGCATAGCAGCTTTACAGAACTCCAAGAGTTTGCAAAACTTATATCTCCTGATAACATTATACCAAGCGTGAACAATGATGGACCAGAATCTGCTGATGCAATGATTTCTCTCATGATATCTTGA 2121 0.4092 MLDDDIYDLPLTQTATSLSKKPKHNNSFEIDKENIPSNPNSPFPNYSTIDSDDYAPHEFENCSLDFIPSTIDMDCTTFQHHRVSSSHSSHSYCSAPRELKGGYFGNSIESKLVLLRNESEKLSDEVAELDSDSELDPLLKLCNELEQLDGDCVRYPLCEVDISNLTEEQRNLHTNVCLHKSQDTPQHVSPHVEEVDAQSVPKVSPVVDWLRNLGLVKYEHVFVREEVDFDILQWLTEEDLLSMGVTALGPRKKIVHALSELRKGAAPKNEEHEDAPAEPRRIRNQKAKVQHDKSERKFGSTSKPVANKLITEYFPGFAINGKKVSAIPGEQPEIKNSCSGSGHKHKVKNTPTNRKLRDVPKWCIIPGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKLHVLPLNEKVKISDVDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEIALNPLLHTCPIHTLIVDSTYCNPQYDFPKQDAVIQFVIDAIQAESFNPKTLFLIGSYTIGRVQYNSFPFSIFMLRKERLFLEVARALHKKVYVTAAKMRVLECLEFQDEDMQWFTSNEHESNIHVAPMWTLASFKRLKHVSCQYASRFSLIVAFSPTGWTFGKGKKKPGRRWQQGTIIRYEVPYSEHSSFTELQEFAKLISPDNIIPSVNNDGPESADAMISLMIS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0180 706 CDD SNM1A-1C-like_MBL-fold 350 503 - -
Lal17g0180 706 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 154 703 - -
Lal17g0180 706 Pfam DNA repair metallo-beta-lactamase 590 692 IPR011084 -
Lal17g0180 706 MobiDBLite consensus disorder prediction 18 40 - -
Lal17g0180 706 Gene3D - 365 689 IPR036866 -
Lal17g0180 706 SMART Lactamase_B_5a 210 492 IPR001279 -
Lal17g0180 706 MobiDBLite consensus disorder prediction 263 299 - -
Lal17g0180 706 SMART SAM_4 198 264 IPR001660 GO:0005515
Lal17g0180 706 SUPERFAMILY Metallo-hydrolase/oxidoreductase 369 688 IPR036866 -
Lal17g0180 706 MobiDBLite consensus disorder prediction 332 351 - -
Lal17g0180 706 MobiDBLite consensus disorder prediction 332 346 - -
Lal17g0180 706 Pfam SAM domain (Sterile alpha motif) 202 262 IPR001660 GO:0005515
Lal17g0180 706 Gene3D - 197 275 IPR013761 -
Lal17g0180 706 Coils Coil 112 132 - -
Lal17g0180 706 MobiDBLite consensus disorder prediction 263 301 - -
Lal17g0180 706 Gene3D - 506 667 - -
Lal17g0180 706 ProSiteProfiles SAM domain profile. 201 264 IPR001660 GO:0005515
Lal17g0180 706 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 154 703 - -
Lal17g0180 706 SUPERFAMILY SAM/Pointed domain 202 263 IPR013761 -
Lal17g0180 706 CDD SAM_superfamily 206 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0180 Lal-Chr17 1093843 1099194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0180 204 258 Glycosyltransferase AT3G07170 49.091 4.09e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0180 K15340 - gmx:100816321 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0180 17 1093843 1099194 Lal17g0180 17 1093843 1099194 ECH