Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0118 ATGATCTCAATCTCTTCCTCCGAACTCAACTACCTAGTCTTCCGTTACCTTCACGAATCAGGTTTTACCCATTCAGCATTTGCATTTGGTTATGAAGCAGGAATAGATAAAAGCAGAATTGATGTTAATATGGTCCCACCAGGTGCTCTCGTTACTTTTGTACAGAAAGGAATTCAATATCTTGAGCTGGAAGCAAATTTTAGTGGTAGCGATGCAGACATGGACGAGGATTTTTCATTTATACAGCCTCTTGATCTTATCACAAAGGACCCGAATGAACTACACAATATGATAAAAGCCAAAAAGGAAAATCTCCGTCAACATAAGATCGAATCAAATAAAACAGTGAATGAGGACAATACACGAGAGCATCTTCAGGGAAAAGAAAAAGAGAGGAAAGAAAAGGAAAATGAACTCGGAATGGAAAAAATAAGGCTAGAAAAAGAAAGAGAGAAGGAAAAAGGTGTACTCGAAGTGCTACACCCTGATCAAAACCATACAGAGAACCATGAAGATAAGATTGTAGTTGAAAATCTAGAAAATGGAGGGCACGAAGGGCCTGAGCCAATGGAGATCTCCCAAAGCCTCAGTTCACTGTCTAACAATATTCCTTCTAGTGATGTAAAAATTTTGGAAGGTCATACGTCCGAGGTTTTTGCTTGTGCATGGAATCCATCAGGCCCCCTTCTTGCATCTGGATCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGAAGGACCTTGTGACTCTAGTGTGCAAAATGAAATGGTAAATGTTGTGGTACTGAAGCACTTTAAAGGAAGAACCAACGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGACGGAACATTATTGGCAACTGGTTCCTACGATGGTCAAGCAAGAATATGGAGTAGAGATGGAGAATTGAAGAGCACATTGAACAAGCATAAAGGTCCAATCTTTTCTCTAAAATGGAACAAGAAAGGGGATTATCTTCTTAGTGGAAGTGTAGATAAAACTGCTATTGTATGGGACATAAAGACTGGGGAATGGAAACAACAGTTTGAATATCACTCTGCCCCGACTCTTGACGTTGATTGGCGAAACAATGTTTCATTCGCAACATGCTCCACTGATAATATGATATATGTATGTAAAATTGGAGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGGTGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCATTGCTGGCTTCGTGCTCTGATGATCACACTGCAAAAATATGGAGTCTAAAGCAGGAGCAGCATTTACATGATTTAAAGGAACATGCCAAGGAGATATATACAATCCGATGGAGCCCCACGGGCCCAGGTACCAACAATCCTAATCAGCAGTTAGTGCTAGCAAGTGCCTCCTTTGACTCTACGGTGAAGCTCTGGGATGTGGAACTTGGAAAAGTACTCTACAACTTAAATGGCCACAGGGATCCTGTATATTCCATTGCATTCAGCCCTAATGGTGAGTATCTGGCTAGTGGTTCCATGGATAAATGCATGCACATATGGTCCGTGAAGGAAGGCAAAATTGTGAAAAAATATGGTGGAAATGGTGGGATATTTGAAGTCAGTTGGAGTAAAGATGGTGATAAAGTGGCTGCTTGTTTTTCAAACAATATAGTTTCTGTTATTGAATTAAGAATGTAA 1692 0.4025 MISISSSELNYLVFRYLHESGFTHSAFAFGYEAGIDKSRIDVNMVPPGALVTFVQKGIQYLELEANFSGSDADMDEDFSFIQPLDLITKDPNELHNMIKAKKENLRQHKIESNKTVNEDNTREHLQGKEKERKEKENELGMEKIRLEKEREKEKGVLEVLHPDQNHTENHEDKIVVENLENGGHEGPEPMEISQSLSSLSNNIPSSDVKILEGHTSEVFACAWNPSGPLLASGSGDSTARIWKIAEGPCDSSVQNEMVNVVVLKHFKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEYHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSLLASCSDDHTAKIWSLKQEQHLHDLKEHAKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVELGKVLYNLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKIVKKYGGNGGIFEVSWSKDGDKVAACFSNNIVSVIELRM 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 244 - -
Lal17g0118 563 SMART Lish 5 37 IPR006594 GO:0005515
Lal17g0118 563 Pfam WD domain, G-beta repeat 482 519 IPR001680 GO:0005515
Lal17g0118 563 Pfam WD domain, G-beta repeat 307 343 IPR001680 GO:0005515
Lal17g0118 563 Pfam WD domain, G-beta repeat 208 243 IPR001680 GO:0005515
Lal17g0118 563 Pfam WD domain, G-beta repeat 389 426 IPR001680 GO:0005515
Lal17g0118 563 Pfam WD domain, G-beta repeat 431 477 IPR001680 GO:0005515
Lal17g0118 563 Pfam WD domain, G-beta repeat 263 302 IPR001680 GO:0005515
Lal17g0118 563 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 302 - -
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 302 IPR001680 GO:0005515
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 352 IPR001680 GO:0005515
Lal17g0118 563 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 563 - -
Lal17g0118 563 PANTHER WD40 REPEAT PROTEIN 4 563 IPR045183 GO:0003714|GO:0016575
Lal17g0118 563 CDD WD40 208 519 - -
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 436 486 IPR001680 GO:0005515
Lal17g0118 563 Pfam LisH 8 33 IPR006594 GO:0005515
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 252 IPR001680 GO:0005515
Lal17g0118 563 MobiDBLite consensus disorder prediction 113 137 - -
Lal17g0118 563 Gene3D - 2 90 - -
Lal17g0118 563 ProSitePatterns Trp-Asp (WD) repeats signature. 464 478 IPR019775 -
Lal17g0118 563 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Lal17g0118 563 Coils Coil 118 152 - -
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 524 - -
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 348 - -
Lal17g0118 563 SUPERFAMILY WD40 repeat-like 202 559 IPR036322 GO:0005515
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 428 - -
Lal17g0118 563 Gene3D - 199 563 IPR015943 GO:0005515
Lal17g0118 563 PRINTS G protein beta WD-40 repeat signature 230 244 IPR020472 -
Lal17g0118 563 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Lal17g0118 563 PRINTS G protein beta WD-40 repeat signature 464 478 IPR020472 -
Lal17g0118 563 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 480 519 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 346 384 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 304 343 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 387 426 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 522 560 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 259 302 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 429 477 IPR001680 GO:0005515
Lal17g0118 563 SMART WD40_4 204 243 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0118 Lal-Chr17 723616 729875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0118 391 561 Miscellaneous Gene Families AT5G08390 29.480 2.27e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0118 K04508 - gmx:100783690 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0118 17 723616 729875 Lal17g0118 17 723616 729875 ECH