Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0088 ATGGCGAAATCAAGCGCTGATGATTCAGAGCTCCGGCGAGCTTGTGAGGCTGCGATTGAAGGAACCAAACAGAAGATCGTGCTATCGATCCGAGTTGCCAAGACTCATGGAACTTGGGGCAAAACTTCCAAACTTGGTCGTCAAATGGCTAAGCCTAGGGTTCTCGCTATCTCTACAAAAGCCAAAGCTCAGAGAACAAAAGCGTTTCTTCGAGTTTTAAAGTATTCCAATGGAGGAGTTCTTGAGCCTGCTAAGATATACAAGCTAAAGCACCTCTCAAAGGTGGAAGTTGTAACAAATGATCCCAGTGGATGCACATTCACACTGGGATTTGATAACCTTAGAAGCCAGAGCGTGGCTCCCCCGCAGTGGACAATGCGCAATGTTGATGACAGGAATCGCCTCCTGTTTAGTATCTTAAATATCTGCAAAGATGTCCTGGATCGCCTTCCTAAGGTTGTTGGTATTGATGTTGTAGAGATGGCTCTTTGGGCTAAGGAAAATACTCCCAAAGTCACCACTCAAAATAAACAAGAAGATGGTCATTCTGTTGAATCTACTGCAACTGAAACAGAATTGAAAGTCAATGTCGAAAAGGATCTTGTTTCCCAGGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAACTTATGTCATGGGCATTGGTGAAGCAGAGGCATTTTCTGAAAGGTTGAAAAGAGAACTCCAGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTGATAGATGAGGTTTTGCAAGGGCTTGAAGTGGCAACACATTGTGTGGAAGACGTGGATGAATGGTTAGGCATGTTCAATGTGAAACTCCGACACATGAGGGAAGATATTGAATCGATAGAAACCCGAAATAACAAGTTGGAAATGCAATCAGTGAATAACAGATCTCTCATTGATGAGCTTGATAAGCTTCTTGAGAGACTTAGTATCCCTGCAGAGTACTCAGCATGTTTGACAGGAGATTCATTTGATGAAGCGCGAATGCTTCAAAATGTGGAAGCAGTTGAGTGGTTGATCAGTGCCATGCGCCGTCTTGAAATGAATATGGATCCTACTTATGCAAAAATGAGAGGCGTTAAAGAGAAACGAGGAGAACTTCAAATATTAAAATCTACATTTGTCAGGAAAGCTTCTGAGTTCCTGAGAAATTACTTTGCTAGTTTCATTGACTTCATGATGAATGATAAAAGTTACTTTTCTCAGCGGGGACAATTGAAAAGGCCAGATCACTCTGACCTGCGGTTCAAGTGCAGGACATATGCACGACTTCTGCAATATTTAAAGGTTCTTGATAAGAATTGCTTGGGTCCTTTAAGAAAAGCTTATTGCTGTTCTCTAAACTTGCTTCTTCGCCGAGAGGCCCGTGAGTTCTCTAATGAACTCCGTGCTAGTACTAAGGCACCAAGAAATGCAACTGTTTGGCTTGAAGGTTCCACAGGTTCTGGTCAGAATGTAAATTCTGCTGACACCTCTACAGTTTCTGATGCATATGCAAAGATTCTTACCATTTTTATCCCACTTCTTGTGGATGAGAGCTCTTTTTTTGCACATTTCATGTGCTTCGAAGTTCCTACACTTGTTCCACTAGGAGGAAGTGGTAAGAAAACCGGAAATGAGGATGATGCTAAGGGTGATGATATGGGAATTATGGATATCGATGAGAAAGACAGTAAATCTGGTAAAAATTCTGCTGAGCTTGCAGCTTTAAATGAAGCACTACAGGATTTGCTTGATGGAATTCAAGAAGATTTCTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTAAGATGCATATCAATGCATGGAATTACAGAACGCTATCTCTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTCCGCCTTTTGCTTGGTGACCTGGAGTCTCGGATATCTATGCAATTCAGCCGTTATGTTGATGAAGCTTGCCATCAGATTGAAAGATACGAGCGCAATGTTCGCCAAATGGGTGTCCTAGGCTACATTCCCAGATTTGCATCCCTTGCAACAAGGATGGAGCAGTACATCTCAGGACAGTCAAGGGATTTGGTTGACCAAGCATACACAAAATTTCCTTGTCGCAACCGTAATGTTGCTACTTTGTGGGGTTCAAATCTTAAAAACAACCTCTTCGTTTGCAAGGATAAGGTTGCATATAACTACCTCTCCCTAGACCCCACTAGTATTGGCATATTGTTTGCTGGTGGAATTGTTCCTTTACAGGTTAGCATAATGTTTGTAACTTTGGAAAAGCTGGCACAAACAGATCCAAAGTATGCTGATATTTTTCTTTTGGAGAACTATGCGGCCTTTCAAAATAGTTTGTATGACCTTGCCAATGTTGTGCCCACTTTGGCCAAATTTTATCATCAAGCTAGTGAAGCCTATGAGCAAGCTTGCACACGCCATATTAGCATGATTATCTACTATGTAAATATTTCATTCTCTATTTTCTTTCTGTTTGATGCCATGCTCGAATTTATACGCAACTCATTATCCTTTTTCTTCCTTGAAAAGCAATTTGAACGCCTTTTCCAGTTTGCTCGAAGGATTGAGGACTTGATGTTCACTGTTCAACCTGAAGAGATTCCTTTCCAGCTGGGGCAGCTTGGGCTATCAAAAGTGGATCTCCGTAAGATGCTAAAATCTAGTTTATCTGGGGTGGACAAGTCCATTGCTGCAATGTATAAGAAACTGCAGAAGAATTTAGCTTCAGAGGAATTGCTACCTTCCTTATGGGATAAATGCAAGAAGGAGTTTCTTGATAAGTACGAAAGTTTTGTCCAACTTGTAGCCAAGGTTTACCCTGGTGAGTCAATCCCTTCCGTAAAAGAAATGAAAGACCTATTAGCTTCCATGTAA 2898 0.4172 MAKSSADDSELRRACEAAIEGTKQKIVLSIRVAKTHGTWGKTSKLGRQMAKPRVLAISTKAKAQRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKVEVVTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNVDDRNRLLFSILNICKDVLDRLPKVVGIDVVEMALWAKENTPKVTTQNKQEDGHSVESTATETELKVNVEKDLVSQAEEEDMEALLGTYVMGIGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLQGLEVATHCVEDVDEWLGMFNVKLRHMREDIESIETRNNKLEMQSVNNRSLIDELDKLLERLSIPAEYSACLTGDSFDEARMLQNVEAVEWLISAMRRLEMNMDPTYAKMRGVKEKRGELQILKSTFVRKASEFLRNYFASFIDFMMNDKSYFSQRGQLKRPDHSDLRFKCRTYARLLQYLKVLDKNCLGPLRKAYCCSLNLLLRREAREFSNELRASTKAPRNATVWLEGSTGSGQNVNSADTSTVSDAYAKILTIFIPLLVDESSFFAHFMCFEVPTLVPLGGSGKKTGNEDDAKGDDMGIMDIDEKDSKSGKNSAELAALNEALQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRISMQFSRYVDEACHQIERYERNVRQMGVLGYIPRFASLATRMEQYISGQSRDLVDQAYTKFPCRNRNVATLWGSNLKNNLFVCKDKVAYNYLSLDPTSIGILFAGGIVPLQVSIMFVTLEKLAQTDPKYADIFLLENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYVNISFSIFFLFDAMLEFIRNSLSFFFLEKQFERLFQFARRIEDLMFTVQPEEIPFQLGQLGLSKVDLRKMLKSSLSGVDKSIAAMYKKLQKNLASEELLPSLWDKCKKEFLDKYESFVQLVAKVYPGESIPSVKEMKDLLASM 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0088 965 Coils Coil 188 208 - -
Lal17g0088 965 Coils Coil 221 248 - -
Lal17g0088 965 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Lal17g0088 965 Coils Coil 281 318 - -
Lal17g0088 965 PANTHER SEC3/SYNTAXIN-RELATED 1 703 - -
Lal17g0088 965 PANTHER SEC3/SYNTAXIN-RELATED 754 823 - -
Lal17g0088 965 PANTHER SEC3/SYNTAXIN-RELATED 850 965 - -
Lal17g0088 965 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 850 965 - -
Lal17g0088 965 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 754 823 - -
Lal17g0088 965 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 703 - -
Lal17g0088 965 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
Lal17g0088 965 Pfam Exocyst complex component Sec3 573 817 IPR019160 GO:0000145|GO:0006887
Lal17g0088 965 Pfam Exocyst complex component Sec3 848 949 IPR019160 GO:0000145|GO:0006887
Lal17g0088 965 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0088 Lal-Chr17 556945 570283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0088 1 965 EF-hand Containing Proteins AT1G47550 76.519 0.0 1498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0088 K19983 - pvy:116110663 1466.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0088 17 556945 570283 Lal17g0088 17 556945 570283 ECH