Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0087 ATGACACTTACCACTATCTCCAAATTTTCTTCACTCGTCTTCCTTCTCTTCTTACTAGGTAATGTAGCGACAGCAACCGTCTTTACCCTCAGAAACCGTTGTGACCAGACGGTGTGGCCTGGAACTCTTTCCGGCAACGGCGCTGCCCTTCTCGGCGACGGTGGATTTCCTCTACCGCCGGGATCGTCAATTCAGCTAACTGCTCCGGCAGGATGGTCAGGTCGCTTCTGGGCCAGAACCGGCTGTAATTTCGACAGTGCCGGCAACGGAAAATGTGCAACCGGAGACTGTTCCGGTGGACTGAAGTGCACCGGTGGTGGTGTTCCGCCGGTGACACTGGTGGAGTTCACAATCGGAACCCCAAGCAACAACAAAGACTTCTACGATGTGAGCCTGGTGGACGGTTATAACGTTGGCATGGGAGTGAGGGCAACCGGTGGAACCGGTGACTGCCAGTACGCTGGTTGTGTTGCGGACTTAAATGGTAACTGCCCGAAGGAGTTGCAGGTAACGGACGAGGGAGGTTCAGTTGTGGCGTGTAAGAGTGCGTGTGCGGCGTTTAACACGGGAGAGTTTTGTTGCACCGGTGATCACGCGACACCGCAGAGTTGCAGTCCAACACAATATTCTGAATTGTTCAAGAGTGCGTGTCCCTCTGCTTATAGTTACGCTTACGACGATGCTTCAAGCACTTGCACTTGTTCTCATTCTGATTATCATATCACGTTTTGTCCAAACGGTACTTCATAG 750 0.524 MTLTTISKFSSLVFLLFLLGNVATATVFTLRNRCDQTVWPGTLSGNGAALLGDGGFPLPPGSSIQLTAPAGWSGRFWARTGCNFDSAGNGKCATGDCSGGLKCTGGGVPPVTLVEFTIGTPSNNKDFYDVSLVDGYNVGMGVRATGGTGDCQYAGCVADLNGNCPKELQVTDEGGSVVACKSACAAFNTGEFCCTGDHATPQSCSPTQYSELFKSACPSAYSYAYDDASSTCTCSHSDYHITFCPNGTS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0087 249 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
Lal17g0087 249 CDD TLP-PA 27 244 - -
Lal17g0087 249 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Lal17g0087 249 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Lal17g0087 249 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Lal17g0087 249 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Lal17g0087 249 PRINTS Pathogenesis-related protein signature 235 244 IPR001938 -
Lal17g0087 249 PANTHER PATHOGENESIS-RELATED PROTEIN 5-RELATED 10 246 - -
Lal17g0087 249 SUPERFAMILY Osmotin, thaumatin-like protein 27 246 IPR037176 -
Lal17g0087 249 Pfam Thaumatin family 32 245 IPR001938 -
Lal17g0087 249 PIRSF PR5 1 249 IPR001938 -
Lal17g0087 249 Gene3D Thaumatin 26 245 IPR037176 -
Lal17g0087 249 ProSitePatterns Thaumatin family signature. 88 103 IPR017949 -
Lal17g0087 249 SMART tha2 28 245 IPR001938 -
Lal17g0087 249 PANTHER OS03G0233200 PROTEIN 10 246 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0087 Lal-Chr17 540069 541130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0087 11 249 Receptor kinase-like Gene Family AT5G38280 46.185 2.61e-63 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0087 - - gmx:100809378 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0087 17 540069 541130 Lal17g0087 17 540069 541130 ECH