Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0074 ATGACGGACACAGAAGACGCTGTACGACGTCGTAATGCGGTCACCGAATACCGAAAGAAACTCCTTCAGCACAAGGAATTGGAATCTAGAGTCCGATCCGTCAGGGAAAATTTGAGAGCTTCAAAGAAAGAGTTCAATAAAACAGAGGATGATTTGAAGTCTCTCCAAAGTGTTGGGCAGATCATTGGCGAAGTTTTGAGGCCTCTTGACAATGAACGCTGTAATGATTCTTTCCTTTTTCATTTCATATTTGAGTACGTAGTTGGCTGCCGCAGCAAAGTGGATAAGGAAAAACTGACTTCCGGAACAAGGGTTGTTCTTGATATGACAACACTCACTATCATGCGTGCTCTTCCACGTGAAGTTGATCCAGTAGTTTACAACATGTTGCATGAAGATCCCGGTAATGTCAGTTACTCAGCTATTGGTGGTTTATCTGATCAGATAAGGGAATTGCGTGAATCAATTGAATTACCTCTAATGAATCCTGAGCTCTTTCTTCGAGTTGGAATTAAGCCTCCTAAGGGTGTTCTCCTTTATGGGCCTCCTGGTACTGGTAAAACATTGTTAGCTAGGGCAATTGCCAGTAATATAGATGCTAACTTCTTAAAGGTTGTTTCAAGTGCCATCATTGATAAGTACATTGGAGAAAGTGCCAGGTTGATACGAGAAATGTTTGGGTATGCACGTGATCACCAGCCCTGCATCATTTTTATGGATGAGATCGATGCCATTGGTGGTCGACGTTTCAGTGAGGGAACAAGTGCAGATCGTGAGATTCAGAGAACACTGATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTTGGGAAGGTTAAAATGATAATGGCAACAAACCGACCTGATGTACTTGATCCTGCTCTCTTGCGTCCTGGGAGATTGGATAGAAAAATAGAAATTCCCTTGCCAAATGAACAATCACGGACAGAAATTCTGAAGATTCATGCTGCTGGAATTGCTAAGCATGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGTGAGCTCAGTGCTTTGGGGATTTAATGGGGCTGATCTTCGAAATGTGTGCACGGAGGCTGGAATGTCAGCAATTCGTGCAGAGCGTGATTATGTGATCCACGAGGATTTTATGAAGGCTGTTAGGAAACTGAATGAGGCAAAGAAACTTGAATCCAGTGCACATTACAATGCTGATTTTGGAAAGGACTAG 1221 0.4275 MTDTEDAVRRRNAVTEYRKKLLQHKELESRVRSVRENLRASKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERCNDSFLFHFIFEYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAIGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYEAVVKLAEVSSVLWGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0074 406 Gene3D - 23 129 IPR012340 -
Lal17g0074 406 Gene3D - 130 310 IPR027417 -
Lal17g0074 406 CDD AAA 143 310 - -
Lal17g0074 406 Pfam AAA+ lid domain 339 381 IPR041569 -
Lal17g0074 406 PANTHER - 4 393 - -
Lal17g0074 406 ProSitePatterns AAA-protein family signature. 280 298 IPR003960 GO:0005524|GO:0016887
Lal17g0074 406 SMART AAA_5 173 312 IPR003593 -
Lal17g0074 406 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 22 387 IPR005937 GO:0005737|GO:0030163|GO:0036402
Lal17g0074 406 Pfam ATPase family associated with various cellular activities (AAA) 177 310 IPR003959 GO:0005524|GO:0016887
Lal17g0074 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 391 IPR027417 -
Lal17g0074 406 Gene3D - 315 400 - -
Lal17g0074 406 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 393 - -
Lal17g0074 406 Coils Coil 24 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0074 Lal-Chr17 458024 461375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0074 136 386 Miscellaneous Gene Families AT3G47060 40.157 8.53e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0074 K03064 - zju:107435476 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0074 17 458024 461375 Lal17g0074 17 458024 461375 ECH
Lal17g0074 17 458024 461375 Lal21g0141 21 976023 980208 LSH