Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0072 ATGAATAGAAGGATGATGTTTGGTGCGGAATTGGAGGTTGTGGGAGGGAAAATGTTTGTTCGGCGATTGGGTTGGATGCCCATTCCTCTAACAGCCACAGTTGGCCTTCGTTCTCATGTTTGGTGCATCTGGAAGAAGCAGAACCACCACCACCACCACCACCACCACCACCACCTTATCTTTTCTCACTCTCTCTCCAGAAACGTTTCCGTTTACTCTTTCTGCTCTGACTCCAACTTTAACCAACACACTCTTCCTCAACAATCATCAAAACCTGGTAACAATGTTCTGAAGCCAGGGCTTTATCTTGTAGGAACACCAATTGGAAATCTTGAAGATATCACCTTCAGGGCTCTCAAGGTACTGAAATCAGCAAATGTTATACTCTCAGAAGATACACGTCACTCTGGCAAGTTACTTCACCACTACAATATCAAAACACCCCTTATGAGTTATCACAAATTTAATGAATCACAAAGGGAACATGTTGTGTTAAAGAGGTTGAAGGAGGGTGAGATTGTGGCACTCATAACTGATGCTGGAACCCCAGGCATCAGTGATCCCGGTATGGATTTGGCTAAATTATGTGTTGATGAGCATATCCTTGTTGTTCCCATCCCCGGGCCGTGTGCTTTGGTATCAGCTCTTTCTGCCTCGGGTTTGCCTACCGATGAATTTACATTTGTTGGCTTTCTTCCAAAGCATTCCGGGTCAAGAAGAAAAAGGCTAATGGTTTCAGCAGATCAAAAAGCAACACAGATATTTTACGTACCTCCTCACAAGCTTTCACAGTTTCTCGAAGAAAGTTCTTCAATTTTTGGTGATGCAAGGCGATGTGTTATTGCTCGGGAAATGACTAAGTTACATGAGGAGTTTTGGCGTGGTACTCTCAGTGAAGCCAAGGAAGTATTTTCTTTACGCCAGGCAAAGGGAGAACTCACCATATTGATTGAAGGGCAAGCAGATTCTAAAGTTGAACCTCCATCAGATATTCAGCTTGAGAATGACCTAAAAGAATTGATTGCAAGTGGTGAGAGTCTTTCTTCGGCTGTCAAATTGGTCGCCAGCAGAACATCAATGAGTAGAAAAACTATATATTCACTTGCATTAAGCAAATTCGGAGAGCAACTGGAAGAGGAAGACAATTCAAATTAG 1155 0.4294 MNRRMMFGAELEVVGGKMFVRRLGWMPIPLTATVGLRSHVWCIWKKQNHHHHHHHHHHLIFSHSLSRNVSVYSFCSDSNFNQHTLPQQSSKPGNNVLKPGLYLVGTPIGNLEDITFRALKVLKSANVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREHVVLKRLKEGEIVALITDAGTPGISDPGMDLAKLCVDEHILVVPIPGPCALVSALSASGLPTDEFTFVGFLPKHSGSRRKRLMVSADQKATQIFYVPPHKLSQFLEESSSIFGDARRCVIAREMTKLHEEFWRGTLSEAKEVFSLRQAKGELTILIEGQADSKVEPPSDIQLENDLKELIASGESLSSAVKLVASRTSMSRKTIYSLALSKFGEQLEEEDNSN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0072 384 Gene3D - 86 207 IPR014777 GO:0008168
Lal17g0072 384 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 101 370 IPR008189 GO:0008168
Lal17g0072 384 CDD RsmI 102 318 IPR008189 GO:0008168
Lal17g0072 384 Gene3D - 208 325 IPR014776 GO:0008168
Lal17g0072 384 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 87 381 IPR008189 GO:0008168
Lal17g0072 384 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 87 381 - -
Lal17g0072 384 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 100 319 IPR008189 GO:0008168
Lal17g0072 384 SUPERFAMILY Tetrapyrrole methylase 99 317 IPR035996 GO:0008168
Lal17g0072 384 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 101 300 IPR000878 GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0072 K07056 - gmx:100819709 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0072 17 443654 448121 Lal17g0072 17 443654 448121 ECH